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Krt90 Gene Detail
Summary
  • Symbol
    Krt90
  • Name
    keratin 90
  • Synonyms
    4732456N10Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3045312
    NCBI Gene: 239673
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:101552356-101562950 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 56.90 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    108 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3045312
protein coding gene Chr15:101552356-101562950 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022379
protein coding gene Chr15:103652794-103663353 (-)
A/J MGP_AJ_G0022341
protein coding gene Chr15:99536034-99546611 (-)
AKR/J MGP_AKRJ_G0022317
protein coding gene Chr15:102575867-102586428 (-)
BALB/cJ MGP_BALBcJ_G0022345
protein coding gene Chr15:99645694-99656256 (-)
C3H/HeJ MGP_C3HHeJ_G0022113
protein coding gene Chr15:102669201-102679778 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022793
protein coding gene Chr15:107519718-107532090 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020318
protein coding gene Chr15:95390950-95401246 (-)
CAST/EiJ MGP_CASTEiJ_G0021639
protein coding gene Chr15:103520733-103531313 (-)
CBA/J MGP_CBAJ_G0022083
protein coding gene Chr15:111255235-111265811 (-)
DBA/2J MGP_DBA2J_G0022211
protein coding gene Chr15:98862849-98873620 (-)
FVB/NJ MGP_FVBNJ_G0022190
protein coding gene Chr15:97925167-97935739 (-)
LP/J MGP_LPJ_G0022281
protein coding gene Chr15:103805258-103818778 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022211
protein coding gene Chr15:114902298-114913587 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022807
protein coding gene Chr15:102617832-102628407 (-)
PWK/PhJ MGP_PWKPhJ_G0021378
protein coding gene Chr15:99036914-99047472 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021210
protein coding gene Chr15:102502376-102512867 (-)
WSB/EiJ MGP_WSBEiJ_G0021689
protein coding gene Chr15:103259999-103271970 (-)



Homology
more
  • Human Ortholog
    KRT90P, keratin 90 pseudogene
  • Vertebrate Orthologs
    4
  • Human Ortholog
    KRT90P, keratin 90 pseudogene
    Orthology source: HGNC
  • Synonyms
    HBA, KRT124P, KRTHBP1
  • Links
    NCBI Gene ID: 85340

  • Chr Location
    12q13.13; chr12:52413861-52419240 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    8 phenotypes from 2 alleles in 3 genetic backgrounds
    3 images
    30 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a spontaneous mutation exhibit partial prenatal lethality and thickened long toenails. An increased caudal vertebrae number is observed in some mutant mice.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 239673 NCBI Gene Model | MGI Sequence Detail 10595 C57BL/6J ±  kb
    transcript NM_177717 RefSeq | MGI Sequence Detail 2534 C57BL/6  
    polypeptide NP_808385 RefSeq | MGI Sequence Detail 538 C57BL/6  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      3 Sequences
    • InterPro Domains
      IPR018039 Intermediate filament protein, conserved site
      IPR039008 Intermediate filament, rod domain
      IPR042180 Intermediate filament, rod domain, coil 1B
      IPR003054 Keratin, type II
      IPR032444 Keratin type II head
    Molecular
    Reagents
    less
    • All nucleic 4
      cDNA 4

      Microarray probesets 1
    References
    more
    • Summaries
      All 44
      Diseases 1
      Phenotypes 30
    • Earliest
      J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
    • Latest
      J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    11/10/2020
    MGI 6.16
    The Jackson Laboratory