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Krt90 Gene Detail
Summary
  • Symbol
    Krt90
  • Name
    keratin 90
  • Synonyms
    4732456N10Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3045312
    NCBI Gene: 239673
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:101552356-101562950 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 56.90 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    108 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3045312
protein coding gene Chr15:101552356-101562950 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022379
protein coding gene Chr15:103652794-103663353 (-)
A/J MGP_AJ_G0022341
protein coding gene Chr15:99536034-99546611 (-)
AKR/J MGP_AKRJ_G0022317
protein coding gene Chr15:102575867-102586428 (-)
BALB/cJ MGP_BALBcJ_G0022345
protein coding gene Chr15:99645694-99656256 (-)
C3H/HeJ MGP_C3HHeJ_G0022113
protein coding gene Chr15:102669201-102679778 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022793
protein coding gene Chr15:107519718-107532090 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020318
protein coding gene Chr15:95390950-95401246 (-)
CAST/EiJ MGP_CASTEiJ_G0021639
protein coding gene Chr15:103520733-103531313 (-)
CBA/J MGP_CBAJ_G0022083
protein coding gene Chr15:111255235-111265811 (-)
DBA/2J MGP_DBA2J_G0022211
protein coding gene Chr15:98862849-98873620 (-)
FVB/NJ MGP_FVBNJ_G0022190
protein coding gene Chr15:97925167-97935739 (-)
LP/J MGP_LPJ_G0022281
protein coding gene Chr15:103805258-103818778 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022211
protein coding gene Chr15:114902298-114913587 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022807
protein coding gene Chr15:102617832-102628407 (-)
PWK/PhJ MGP_PWKPhJ_G0021378
protein coding gene Chr15:99036914-99047472 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021210
protein coding gene Chr15:102502376-102512867 (-)
WSB/EiJ MGP_WSBEiJ_G0021689
protein coding gene Chr15:103259999-103271970 (-)



Homology
more
  • Human Ortholog
    KRT90P, keratin 90 pseudogene
  • Vertebrate Orthologs
    4
  • Human Ortholog
    KRT90P, keratin 90 pseudogene
    Orthology source: HGNC
  • Synonyms
    HBA, KRT124P, KRTHBP1
  • Links
    NCBI Gene ID: 85340

  • Chr Location
    12q13.13; chr12:52413861-52419240 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotypes from 1 allele in 2 genetic backgrounds
    3 images
    27 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a spontaneous mutation exhibit partial prenatal lethality and thickened long toenails. An increased caudal vertebrae number is observed in some mutant mice.
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 239673 NCBI Gene Model | MGI Sequence Detail 10595 C57BL/6J ±  kb
transcript NM_177717 RefSeq | MGI Sequence Detail 2534 C57BL/6  
polypeptide NP_808385 RefSeq | MGI Sequence Detail 538 C57BL/6  
For the selected sequence
Protein
Information
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  • UniProt
    3 Sequences
  • InterPro Domains
    IPR001664 Intermediate filament protein
    IPR018039 Intermediate filament protein, conserved site
    IPR039008 Intermediate filament, rod domain
    IPR003054 Keratin, type II
    IPR032444 Keratin type II head
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 1
References
more
  • Summaries
    All 41
    Diseases 1
    Phenotypes 27
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/04/2018
MGI 6.13
The Jackson Laboratory