Fam71e2 Gene Detail

Summary

• Symbol
  Fam71e2
• Name
  family with sequence similarity 71, member E2
• Synonyms
  4930401F20Rik

• Feature Type
  protein coding gene
• IDs
  MGI:3045311
  NCBI Gene: 243822
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr7:4753226-4771302 bp, - strand
• From Ensembl annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 2.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045311	protein coding gene	Chr7:4753226-4771365 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0031559	protein coding gene	Chr7:1682226-1708644 (-)
A/J	MGP_AJ_G0031533	protein coding gene	Chr7:1689702-1710704 (-)
AKR/J	MGP_AKRJ_G0031462	protein coding gene	Chr7:1756676-1774591 (-)
BALB/cJ	MGP_BALBcJ_G0031541	protein coding gene	Chr7:1729344-1750935 (-)
C3H/HeJ	MGP_C3HHeJ_G0031262	protein coding gene	Chr7:1729772-1750398 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0032002	protein coding gene	Chr7:1746393-1770431 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0029126	protein coding gene	Chr7:1435533-1451826 (-)
CAST/EiJ	MGP_CASTEiJ_G0030626	protein coding gene	Chr7:1673387-1694643 (-)
CBA/J	MGP_CBAJ_G0031220	protein coding gene	Chr7:1945784-1966032 (-)
DBA/2J	MGP_DBA2J_G0031379	protein coding gene	Chr7:1668038-1685490 (-)
FVB/NJ	MGP_FVBNJ_G0031331	protein coding gene	Chr7:1634124-1652658 (-)
LP/J	MGP_LPJ_G0031464	protein coding gene	Chr7:1790034-1812347 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0031370	protein coding gene	Chr7:1881281-1905159 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0032032	protein coding gene	Chr7:1668685-1692689 (-)
PWK/PhJ	MGP_PWKPhJ_G0030354	protein coding gene	Chr7:1837179-1859479 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0030179	protein coding gene	Chr7:1718250-1736694 (-)
WSB/EiJ	MGP_WSBEiJ_G0030721	protein coding gene	Chr7:1685614-1706580 (-)

Homology

• Human Ortholog
  FAM71E2, family with sequence similarity 71 member E2

• Vertebrate Orthologs
  7

• Human Ortholog
  FAM71E2, family with sequence similarity 71 member E2
  Orthology source: HomoloGene, HGNC
• Synonyms
  C19orf16
• Links
  HGNC:25278

  NCBI Gene ID: 284418

  neXtProt AC: NX_Q8N5Q1

  UniProt: Q8N5Q1

  
  
• Chr Location
  19q13.42; chr19:55354908-55363252 (-)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 89225
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 macaque, rhesus
  
• HCOP
  human homology predictions: FAM71E2
• Gene Tree
  Fam71e2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  26 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• cDNA Data
  5

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• Fam71e2 interacts with 77 markers (Mir7-1, Mir7-2, Mir7b, ...) View All

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  6
• UniProt
  3
• CCDS
  CCDS57474.1
• UniGene
  333542

• Ensembl
  ENSMUSG00000092518 (Evidence)
• NCBI Gene
  243822

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092518	Ensembl Gene Model | MGI Sequence Detail	18077	C57BL/6J
transcript	ENSMUST00000174409	Ensembl | MGI Sequence Detail	2716	Not Applicable
polypeptide	ENSMUSP00000133885	Ensembl | MGI Sequence Detail	754	Not Applicable

Protein
Information

• UniProt
  3 Sequences
• InterPro Domains
  IPR022168 Domain of unknown function DUF3699

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 2
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Fam71e2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr70540	Chr7:4771343-4771345 (-)	-42 bp
Tssr70539	Chr7:4771331-4771338 (-)	-33 bp
Tssr70538	Chr7:4771279-4771328 (-)	-2 bp
Tssr70537	Chr7:4771262-4771275 (-)	33 bp