G630030J09Rik Gene Detail

Summary

• Symbol
  G630030J09Rik
• Name
  RIKEN cDNA G630030J09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3045288
  NCBI Gene: 442824
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr7:30848953-30852132 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 19.30 cM

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045288	lncRNA gene	Chr7:30848953-30852132 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004438	antisense lncRNA gene	Chr7:30214317-30217494 (+)
A/J	MGP_AJ_G0004417	antisense lncRNA gene	Chr7:29399381-29402556 (+)
AKR/J	MGP_AKRJ_G0004399	antisense lncRNA gene	Chr7:30137549-30140726 (+)
BALB/cJ	MGP_BALBcJ_G0004402	antisense lncRNA gene	Chr7:29574618-29577793 (+)
C3H/HeJ	MGP_C3HHeJ_G0004352	antisense lncRNA gene	Chr7:30600957-30604136 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004552	antisense lncRNA gene	Chr7:31220116-31223314 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004008	antisense lncRNA gene	Chr7:30352201-30355405 (+)
CAST/EiJ	MGP_CASTEiJ_G0004312	antisense lncRNA gene	Chr7:23857772-23862158 (+)
CBA/J	MGP_CBAJ_G0004346	antisense lncRNA gene	Chr7:32678701-32681922 (+)
DBA/2J	MGP_DBA2J_G0004360	antisense lncRNA gene	Chr7:29113369-29116560 (+)
FVB/NJ	MGP_FVBNJ_G0004378	antisense lncRNA gene	Chr7:29232287-29235707 (+)
LP/J	MGP_LPJ_G0004441	antisense lncRNA gene	Chr7:30551984-30555806 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004369	antisense lncRNA gene	Chr7:31903863-31913057 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004550	antisense lncRNA gene	Chr7:29648668-29653070 (+)
PWK/PhJ	MGP_PWKPhJ_G0004265	antisense lncRNA gene	Chr7:24155056-24158200 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004206	antisense lncRNA gene	Chr7:20640696-20643956 (+)
WSB/EiJ	MGP_WSBEiJ_G0004351	antisense lncRNA gene	Chr7:30056749-30060905 (+)

Homology

• Gene Tree
  G630030J09Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000097149 (Evidence)
• NCBI Gene
  442824

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097149	Ensembl Gene Model | MGI Sequence Detail	3180	C57BL/6J
transcript	ENSMUST00000181958	Ensembl | MGI Sequence Detail	2135	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for G630030J09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65846	Chr7:30849370-30849384 (+)	424 bp
Tssr65847	Chr7:30849399-30849417 (+)	455 bp
Tssr65848	Chr7:30849431-30849443 (+)	484 bp
Tssr65849	Chr7:30849452-30849464 (+)	505 bp
Tssr65850	Chr7:30849493-30849500 (+)	544 bp
Tssr65851	Chr7:30850938-30850961 (+)	1,997 bp