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Cntn5 Gene Detail
Summary
  • Symbol
    Cntn5
  • Name
    contactin 5
  • Synonyms
    6720426O10Rik, A830025P08Rik, LOC244683, NB-2
  • Feature Type
    protein coding gene
  • IDs
    MGI:3042287
    NCBI Gene: 244682
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:9660891-10904775 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 2.46 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    5843 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3042287
protein coding gene Chr9:9634223-10904775 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034339
protein coding gene Chr9:6544248-7823962 (-)
A/J MGP_AJ_G0034317
protein coding gene Chr9:6650582-7900934 (-)
AKR/J MGP_AKRJ_G0034245
protein coding gene Chr9:6489417-7770453 (-)
BALB/cJ MGP_BALBcJ_G0034311
protein coding gene Chr9:6366552-7630125 (-)
C3H/HeJ MGP_C3HHeJ_G0034022
protein coding gene Chr9:6760037-8047079 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034833
protein coding gene Chr9:6792057-8121849 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031771
protein coding gene Chr9:5742965-6920365 (-)
CAST/EiJ MGP_CASTEiJ_G0033350
protein coding gene Chr9:6657880-7965856 (-)
CBA/J MGP_CBAJ_G0033995
protein coding gene Chr9:7083053-8493675 (-)
DBA/2J MGP_DBA2J_G0034152
protein coding gene Chr9:6523297-7767518 (-)
FVB/NJ MGP_FVBNJ_G0034097
protein coding gene Chr9:6228261-7445036 (-)
LP/J MGP_LPJ_G0034238
protein coding gene Chr9:6605791-7899989 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034141
protein coding gene Chr9:7720556-9301363 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034852
protein coding gene Chr9:6508445-7844282 (-)
PWK/PhJ MGP_PWKPhJ_G0033053
protein coding gene Chr9:6538286-7784348 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032891
protein coding gene Chr9:6706060-7962898 (-)
WSB/EiJ MGP_WSBEiJ_G0033465
protein coding gene Chr9:6494601-7764081 (-)



Homology
more
  • Human Ortholog
    CNTN5, contactin 5
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CNTN5, contactin 5
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HNB-2s, NB-2
  • Links
    NCBI Gene ID: 53942
    neXtProt AC: NX_O94779
    UniProt: O94779

  • Chr Location
    11q22.1; chr11:99020904-100358885 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous null mice are viable, fertile, and less susceptible to audiogenic seizures.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039488 Ensembl Gene Model | MGI Sequence Detail 1243885 C57BL/6J ±  kb
transcript ENSMUST00000160216 Ensembl | MGI Sequence Detail 4192 Not Applicable  
polypeptide ENSMUSP00000124327 Ensembl | MGI Sequence Detail 1098 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 1
Other
Accession IDs
less
MGI:2442961, MGI:2685353
References
more
  • Summaries
    All 33
    Developmental Gene Expression 4
    Gene Ontology 5
    Phenotypes 10
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:262890 Smirnov AV, et al., Unexpected phenotypic effects of a transgene integration causing a knockout of the endogenous Contactin-5 gene in mice. Transgenic Res. 2018 Feb;27(1):1-13

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory