BC024978 Gene Detail

Summary

• Symbol
  BC024978
• Name
  cDNA sequence BC024978

• Feature Type
  protein coding gene
• IDs
  MGI:3041247
  NCBI Gene: 414069

Location & Maps

• Sequence Map
  Chr7:27195781-27210186 bp, + strand
• From VEGA annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    14406 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 15.84 cM
• Mapping Data
  1 experiment

Homology

• Human Ortholog
  C19orf54, chromosome 19 open reading frame 54

• Vertebrate Orthologs
  8

• Human Ortholog
  C19orf54, chromosome 19 open reading frame 54
  Orthology source: HomoloGene, HGNC
• Links
  HGNC:24758

  NCBI Gene ID: 284325

  neXtProt AC: NX_Q5BKX5

  UniProt: Q5BKX5

  
  
• Chr Location
  19q13.2; chr19:40740856-40750713 (-)  GRCh38.p7

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• HomoloGene
  Vertebrate Homology Class 45689
  1 human;1 mouse;1 chimpanzee;1 cattle;1 dog;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  
• HCOP
  human homology predictions: C19orf54
• Gene Tree
  BC024978
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  47
• Gene trapped
  47
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  44 strains or lines available

Expression

• cDNA Data
  8

• Other Mouse Links
  GEO
  Expression Atlas

Interactions

• BC024978 interacts with 169 markers (Mir7-1, Mir7-2, Mir7b, ...) View All

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  15
• UniProt
  4
• CCDS
  CCDS57529.1, CCDS71921.1
• UniGene
  379069

• VEGA
  OTTMUSG00000023936 (Evidence)
• Ensembl
  ENSMUSG00000078786 (Evidence)
• NCBI Gene
  414069

Representative Sequences			Length	Strain/Species
genomic	OTTMUSG00000023936	VEGA Gene Model | MGI Sequence Detail	14406	C57BL/6J
transcript	OTTMUST00000058483	VEGA | MGI Sequence Detail	7247	Not Applicable
polypeptide	OTTMUSP00000028337	VEGA | MGI Sequence Detail	336	Not Applicable

Polymorphisms

• SNPs within 2kb
  22 from dbSNP Build 142

Protein
Information

• UniProt
  4 Sequences

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582