BC024978 Gene Detail

Summary

• Symbol
  BC024978
• Name
  cDNA sequence BC024978

• Feature Type
  protein coding gene
• IDs
  MGI:3041247
  NCBI Gene: 414069
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr7:27195781-27210184 bp, + strand
• From NCBI annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 15.84 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041247	protein coding gene	Chr7:27195781-27210186 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0031902	protein coding gene	Chr7:25815032-25831333 (+)
A/J	MGP_AJ_G0031881	protein coding gene	Chr7:25209644-25220512 (+)
AKR/J	MGP_AKRJ_G0031811	protein coding gene	Chr7:25875104-25891005 (+)
BALB/cJ	MGP_BALBcJ_G0031886	protein coding gene	Chr7:25433843-25441529 (+)
C3H/HeJ	MGP_C3HHeJ_G0031608	protein coding gene	Chr7:26257217-26274109 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0032351	protein coding gene	Chr7:26669820-26687486 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0029403	protein coding gene	Chr7:26446788-26461248 (+)
CAST/EiJ	MGP_CASTEiJ_G0030943	protein coding gene	Chr7:19556227-19572270 (+)
CBA/J	MGP_CBAJ_G0031573	protein coding gene	Chr7:27838891-27865432 (+)
DBA/2J	MGP_DBA2J_G0031725	protein coding gene	Chr7:25010432-25025065 (+)
FVB/NJ	MGP_FVBNJ_G0031681	protein coding gene	Chr7:25093682-25110946 (+)
LP/J	MGP_LPJ_G0031805	protein coding gene	Chr7:26159102-26174752 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0031716	protein coding gene	Chr7:27448061-27458221 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0032382	protein coding gene	Chr7:25406888-25416463 (+)
PWK/PhJ	MGP_PWKPhJ_G0030667	protein coding gene	Chr7:20042399-20057086 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0030501	protein coding gene	Chr7:16395525-16411887 (+)
WSB/EiJ	MGP_WSBEiJ_G0031051	protein coding gene	Chr7:25697822-25712089 (+)

Homology

• Human Ortholog
  C19orf54, chromosome 19 open reading frame 54

• Vertebrate Orthologs
  8

• Human Ortholog
  C19orf54, chromosome 19 open reading frame 54
  Orthology source: HomoloGene, HGNC
• Links
  HGNC:24758

  NCBI Gene ID: 284325

  neXtProt AC: NX_Q5BKX5

  UniProt: Q5BKX5

  
  
• Chr Location
  19q13.2; chr19:40740856-40750713 (-)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 45689
  1 human;1 mouse;1 chimpanzee;1 cattle;1 dog;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  
• HCOP
  human homology predictions: C19orf54
• Gene Tree
  BC024978
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  47
• Gene trapped
  47
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  48 strains or lines available

Expression

• Assay Results
  631
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Interactions

• BC024978 interacts with 169 markers (Mir7-1, Mir7-2, Mir7b, ...) View All

Sequences &
Gene Models

• All Sequences
  50
• RefSeq
  11
• UniProt
  4
• CCDS
  CCDS57529.1, CCDS71921.1
• UniGene
  379069

• Ensembl
  ENSMUSG00000078786 (Evidence)
• NCBI Gene
  414069

Representative Sequences			Length	Strain/Species
genomic	414069	NCBI Gene Model | MGI Sequence Detail	14404	C57BL/6J
transcript	NM_001290513	RefSeq | MGI Sequence Detail	2447	C57BL/6
polypeptide	NP_001230817	RefSeq | MGI Sequence Detail	361	C57BL/6

Protein
Information

• UniProt
  4 Sequences
• InterPro Domains
  IPR040043 UPF0692 protein

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for BC024978:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65250	Chr7:27195814-27195830 (+)	41 bp
Tssr65251	Chr7:27195841-27195885 (+)	82 bp
Tssr65252	Chr7:27195899-27195915 (+)	126 bp
Tssr65253	Chr7:27196398-27196459 (+)	648 bp
Tssr65254	Chr7:27196976-27196998 (+)	1,206 bp