About   Help   FAQ
Sema3g
Gene Detail
Symbol

Name
ID
Sema3g
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G
MGI:3041242
Feature Type
protein coding gene
Genetic Map
Chromosome 14
19.09 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr14:31217860-31230350 bp, + strand
From VEGA annotation of GRCm38

  12491 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10602  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

HCOP human homology predictions: SEMA3G
Protein SuperFamily: semaphorin
Gene Tree: Sema3g

Human
homologs
SEMA3G, sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 56920
neXtProt AC: NX_Q9NS98

Human Synonyms: sem2

Human Chr (Location): 3p21.1; chr3:52433252-52445027 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a knock-out allele are viable and fertile and exhibit no overt vascular morphogenic defects.
 
Interactions
Sema3g interacts with 210 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (2 annotations)
Component extracellular exosome, extracellular region
External Resources: FuncBase
Expression
Literature Summary: (7 records)
Data Summary: Results (7)    Tissues (6)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 7
cDNA source data(18)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(19) cDNA(18) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000015259 (Evidence)
Ensembl Gene Model ENSMUSG00000021904 (Evidence)
Entrez Gene 218877 (Evidence)
UniGene 27812
DFCI TC1590720, TC1650673
DoTS DT.101271319
NIA Mouse Gene Index U015460
Consensus CDS Project CCDS26908.1
International Mouse Phenotyping Consortium Status Sema3g
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015259 VEGA Gene Model | MGI Sequence Detail 12491 C57BL/6J ±  kb
transcript OTTMUST00000036153 VEGA | MGI Sequence Detail 4538 Not Applicable 
polypeptide OTTMUSP00000016243 VEGA | MGI Sequence Detail 780 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(4) UniProt(1)
Polymorphisms
SNPs within 2kb(123 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007110 Immunoglobulin-like domain
InterPro IPR013783 Immunoglobulin-like fold
InterPro IPR003599 Immunoglobulin subtype
InterPro IPR016201 Plexin-like fold
InterPro IPR001627 Sema domain
InterPro IPR027231 Semaphorin
InterPro IPR015943 WD40/YVTN repeat-like-containing domain
Protein Ontology PR:000014621 semaphorin-3G
References
(Earliest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
(Latest) J:205955 Katayama K, et al., Deletion of Sema3a or plexinA1/plexinA3 causes defects in sensory afferent projections of statoacoustic ganglion neurons. PLoS One. 2013;8(8):e72512
All references(32)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
08/25/2015
MGI 6.0
The Jackson Laboratory