4930417H01Rik Gene Detail

Summary

• Symbol
  4930417H01Rik
• Name
  RIKEN cDNA 4930417H01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041209
  NCBI Gene: 414106
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:122544752-122563376 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 60.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  187 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041209	lncRNA gene	Chr2:122543967-122563376 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015464	unclassified non-coding RNA gene	Chr2:125744413-125763871 (+)
A/J	MGP_AJ_G0015440	unclassified non-coding RNA gene	Chr2:120609172-120628402 (+)
AKR/J	MGP_AKRJ_G0015404	unclassified non-coding RNA gene	Chr2:124064043-124083268 (+)
BALB/cJ	MGP_BALBcJ_G0015403	unclassified non-coding RNA gene	Chr2:120902576-120921788 (+)
C3H/HeJ	MGP_C3HHeJ_G0015226	unclassified non-coding RNA gene	Chr2:124539105-124558931 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015857	unclassified non-coding RNA gene	Chr2:129858699-129878097 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013596	unclassified non-coding RNA gene	Chr2:115528541-115548213 (+)
CAST/EiJ	MGP_CASTEiJ_G0014778	unclassified non-coding RNA gene	Chr2:124789997-124809351 (+)
CBA/J	MGP_CBAJ_G0015207	unclassified non-coding RNA gene	Chr2:134471243-134492413 (+)
DBA/2J	MGP_DBA2J_G0015301	unclassified non-coding RNA gene	Chr2:120042444-120061667 (+)
FVB/NJ	MGP_FVBNJ_G0015308	unclassified non-coding RNA gene	Chr2:118799527-118818834 (+)
LP/J	MGP_LPJ_G0015379	unclassified non-coding RNA gene	Chr2:125987286-126006548 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015332	unclassified non-coding RNA gene	Chr2:138647918-138671829 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015897	unclassified non-coding RNA gene	Chr2:124108445-124132553 (+)
PWK/PhJ	MGP_PWKPhJ_G0014566	unclassified non-coding RNA gene	Chr2:119612834-119632385 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014354	unclassified non-coding RNA gene	Chr2:123187396-123206857 (+)
WSB/EiJ	MGP_WSBEiJ_G0014885	unclassified non-coding RNA gene	Chr2:124986737-125005900 (+)

Homology

• Gene Tree
  4930417H01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930417H01Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000087017 (Evidence)
• NCBI Gene
  414106

Representative Sequences			Length	Strain/Species
genomic	414106	NCBI Gene Model | MGI Sequence Detail	18625	C57BL/6J
transcript	NR_190116	RefSeq | MGI Sequence Detail	2374	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 4930417H01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19857	Chr2:122546137-122546144 (+)	1,389 bp
Tssr19858	Chr2:122546151-122546167 (+)	1,407 bp
Tssr19859	Chr2:122546172-122546182 (+)	1,425 bp