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Skint7 Gene Detail
Summary
  • Symbol
    Skint7
  • Name
    selection and upkeep of intraepithelial T cells 7
  • Synonyms
    C130057D23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3041190
    NCBI Gene: 328505
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:111830120-111845420 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 51.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    251 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3041190
 protein coding gene Chr4:111830120-111845457 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0028545
 protein coding gene Chr4:108734841-108748779 (+)
AKR/J MGP_AKRJ_G0028492
 protein coding gene Chr4:111463020-111486857 (+)
BALB/cJ MGP_BALBcJ_G0028564
 protein coding gene Chr4:108968308-108982149 (+)
C3H/HeJ MGP_C3HHeJ_G0028278
 protein coding gene Chr4:112174342-112189784 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029003
 protein coding gene Chr4:116850524-116959897 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026295
 protein coding gene Chr4:103873126-103955563 (+)
CAST/EiJ MGP_CASTEiJ_G0027715
 protein coding gene Chr4:110011024-110063849 (+)
CBA/J MGP_CBAJ_G0028247
 protein coding gene Chr4:120714601-120728337 (+)
DBA/2J MGP_DBA2J_G0028395
 protein coding gene Chr4:108417769-108431764 (+)
FVB/NJ MGP_FVBNJ_G0028363
 protein coding gene Chr4:107208631-107223060 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0028389
 protein coding gene Chr4:126058796-126129577 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029040
 protein coding gene Chr4:111691562-111707807 (+)
PWK/PhJ MGP_PWKPhJ_G0027439
 protein coding gene Chr4:106589126-106650187 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027263
 protein coding gene Chr4:108989978-109094489 (+)
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    720
  • Tissues
    14
  • cDNA Data
    5
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000049214 Ensembl Gene Model | MGI Sequence Detail 15301 C57BL/6J ±  kb
transcript ENSMUST00000163281 Ensembl | MGI Sequence Detail 1423 Not Applicable  
polypeptide ENSMUSP00000127347 Ensembl | MGI Sequence Detail 395 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 5
    Primer pair 1

    Microarray probesets 1
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:323863 McKenzie DR, et al., Normality sensing licenses local T cells for innate-like tissue surveillance. Nat Immunol. 2022 Mar;23(3):411-422
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory