9130230L23Rik Gene Detail

Summary

• Symbol
  9130230L23Rik
• Name
  RIKEN cDNA 9130230L23 gene

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3041166
  NCBI Gene: 231253
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr5:66145271-66161628 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 33.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  30 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041166	protein coding gene	Chr5:66136701-66161628 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0029586	protein coding gene	Chr5:65682196-65707546 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0029502	protein coding gene	Chr5:65245834-65274063 (-)
BALB/cJ	MGP_BALBcJ_G0029563	protein coding gene	Chr5:63910265-63936772 (-)
C3H/HeJ	MGP_C3HHeJ_G0029286	protein coding gene	Chr5:65574121-65601218 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0030017	protein coding gene	Chr5:68376488-68417683 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0027257	protein coding gene	Chr5:59283445-59308669 (-)
CAST/EiJ	MGP_CASTEiJ_G0028694	protein coding gene	Chr5:64700109-64731249 (-)
CBA/J	MGP_CBAJ_G0029255	protein coding gene	Chr5:70603977-70636144 (-)
DBA/2J	MGP_DBA2J_G0029401	protein coding gene	Chr5:63252105-63277592 (-)
FVB/NJ	MGP_FVBNJ_G0029361	protein coding gene	Chr5:62420301-62451333 (-)
LP/J	MGP_LPJ_G0029486	protein coding gene	Chr5:66171131-66198998 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0028418	protein coding gene	Chr5:62229034-62258484 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0028252	protein coding gene	Chr5:64254819-64284442 (-)
WSB/EiJ	MGP_WSBEiJ_G0028774	protein coding gene	Chr5:65124482-65156141 (-)

Homology

• Gene Tree
  9130230L23Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  19 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Gene trapped
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving 9130230L23Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  10 strains or lines available

Expression

• Assay Results
  672
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• 9130230L23Rik interacts with 57 markers (Mir7-1, Mir7-2, Mir7b, ...) View All

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000054598 (Evidence)
• NCBI Gene
  231253

Representative Sequences			Length	Strain/Species
genomic	231253	NCBI Gene Model | MGI Sequence Detail	16358	C57BL/6J
transcript	NR_027961	RefSeq | MGI Sequence Detail	1454	C57BL/6
polypeptide	Q8CC80	UniProt | EBI | MGI Sequence Detail	163	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 1

References

• Summaries
  All 30

  Phenotypes 19
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for 9130230L23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51158	Chr5:66161621-66161634 (-)	0 bp
Tssr51157	Chr5:66160944-66160948 (-)	682 bp
Tssr51156	Chr5:66158699-66158733 (-)	2,912 bp
Tssr51155	Chr5:66158670-66158690 (-)	2,948 bp
Tssr51154	Chr5:66148577-66148589 (-)	13,045 bp
Tssr51153	Chr5:66147500-66147525 (-)	14,115 bp