5330413P13Rik Gene Detail

Summary

• Symbol
  5330413P13Rik
• Name
  RIKEN cDNA 5330413P13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041161
  NCBI Gene: 414081
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:131661926-131689576 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 63.93 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041161	lncRNA gene	Chr2:131661926-131689603 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015473	unclassified non-coding RNA gene	Chr2:135369630-135398379 (-)
A/J	MGP_AJ_G0015450	unclassified non-coding RNA gene	Chr2:129871297-129898957 (-)
AKR/J	MGP_AKRJ_G0015414	unclassified non-coding RNA gene	Chr2:133602317-133632515 (-)
BALB/cJ	MGP_BALBcJ_G0015413	unclassified non-coding RNA gene	Chr2:130264308-130292129 (-)
C3H/HeJ	MGP_C3HHeJ_G0015236	unclassified non-coding RNA gene	Chr2:134072265-134101223 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015867	unclassified non-coding RNA gene	Chr2:139508270-139540585 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013605	unclassified non-coding RNA gene	Chr2:124606041-124633887 (-)
CAST/EiJ	MGP_CASTEiJ_G0014788	unclassified non-coding RNA gene	Chr2:134377576-134408579 (-)
CBA/J	MGP_CBAJ_G0015217	unclassified non-coding RNA gene	Chr2:144727516-144758991 (-)
DBA/2J	MGP_DBA2J_G0015311	unclassified non-coding RNA gene	Chr2:129265895-129293655 (-)
FVB/NJ	MGP_FVBNJ_G0015318	unclassified non-coding RNA gene	Chr2:127888282-127918076 (-)
LP/J	MGP_LPJ_G0015389	unclassified non-coding RNA gene	Chr2:135588620-135617764 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015342	unclassified non-coding RNA gene	Chr2:148523050-148552608 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015907	unclassified non-coding RNA gene	Chr2:133587773-133615362 (-)
PWK/PhJ	MGP_PWKPhJ_G0014576	unclassified non-coding RNA gene	Chr2:128849190-128877643 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014364	unclassified non-coding RNA gene	Chr2:132737871-132766314 (-)
WSB/EiJ	MGP_WSBEiJ_G0014895	unclassified non-coding RNA gene	Chr2:134502105-134535242 (-)

Homology

• Gene Tree
  5330413P13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  4
• Radiation induced
  1
• Genomic Mutations
  2 involving 5330413P13Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000086822 (Evidence)
• NCBI Gene
  414081

Representative Sequences			Length	Strain/Species
genomic	414081	NCBI Gene Model | MGI Sequence Detail	27651	C57BL/6J
transcript	NR_029381	RefSeq | MGI Sequence Detail	3631	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 5330413P13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr26404	Chr2:131689527-131689598 (-)	13 bp