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B4galnt3 Gene Detail
Summary
  • Symbol
    B4galnt3
  • Name
    beta-1,4-N-acetyl-galactosaminyl transferase 3
  • Feature Type
    protein coding gene
  • IDs
    MGI:3041155
    NCBI Gene: 330406
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:120203073-120294559 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 56.94 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    309 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3041155
protein coding gene Chr6:120200753-120295023 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031200
protein coding gene Chr6:123075360-123176056 (-)
A/J MGP_AJ_G0031169
protein coding gene Chr6:118344017-118435606 (-)
AKR/J MGP_AKRJ_G0031100
protein coding gene Chr6:121525176-121620426 (-)
BALB/cJ MGP_BALBcJ_G0031180
protein coding gene Chr6:118109594-118205448 (-)
C3H/HeJ MGP_C3HHeJ_G0030529
protein coding gene Chr6:62681822-62777946 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031638
protein coding gene Chr6:126217805-126314881 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028798
protein coding gene Chr6:115242083-115345536 (-)
CAST/EiJ MGP_CASTEiJ_G0030287
protein coding gene Chr6:121926439-122060564 (-)
CBA/J MGP_CBAJ_G0030863
protein coding gene Chr6:131229069-131329998 (-)
DBA/2J MGP_DBA2J_G0031019
protein coding gene Chr6:117232711-117323659 (-)
FVB/NJ MGP_FVBNJ_G0030971
protein coding gene Chr6:116357151-116449232 (-)
LP/J MGP_LPJ_G0031098
protein coding gene Chr6:123068942-123162062 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031005
protein coding gene Chr6:135238359-135334299 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031667
protein coding gene Chr6:121554931-121651246 (-)
PWK/PhJ MGP_PWKPhJ_G0030002
protein coding gene Chr6:116228121-116363890 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029831
protein coding gene Chr6:120273822-120372535 (-)
WSB/EiJ MGP_WSBEiJ_G0030370
protein coding gene Chr6:121845329-121946942 (-)



Homology
more
  • Human Ortholog
    B4GALNT3, beta-1,4-N-acetyl-galactosaminyltransferase 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    B4GALNT3, beta-1,4-N-acetyl-galactosaminyltransferase 3
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 283358
    neXtProt AC: NX_Q6L9W6
    UniProt: Q6L9W6

  • Chr Location
    12p13.33; chr12:460377-561892 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041372 Ensembl Gene Model | MGI Sequence Detail 91487 C57BL/6J ±  kb
transcript ENSMUST00000057283 Ensembl | MGI Sequence Detail 3677 Not Applicable  
polypeptide ENSMUSP00000058253 Ensembl | MGI Sequence Detail 986 Not Applicable  
For the selected sequence
Protein
Information
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Molecular
Reagents
less
  • All nucleic 4
    Genomic 1
    cDNA 3

    Microarray probesets 1
References
more
  • Summaries
    All 26
    Gene Ontology 5
    Phenotypes 8
  • Earliest
    J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/06/2019
MGI 6.14
The Jackson Laboratory