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Lsm14b Gene Detail
Summary
  • Symbol
    Lsm14b
  • Name
    LSM family member 14B
  • Feature Type
    protein coding gene
  • IDs
    MGI:3040677
    NCBI Gene: 241846
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:180024987-180035465 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 102.54 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    92 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3040677
protein coding gene Chr2:180024900-180035466 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026982
protein coding gene Chr2:186522094-186532554 (+)
A/J MGP_AJ_G0026948
protein coding gene Chr2:178861568-178872030 (+)
AKR/J MGP_AKRJ_G0026918
protein coding gene Chr2:184212881-184223378 (+)
BALB/cJ MGP_BALBcJ_G0026957
protein coding gene Chr2:179323699-179334163 (+)
C3H/HeJ MGP_C3HHeJ_G0026698
protein coding gene Chr2:184570766-184581247 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027403
protein coding gene Chr2:191915289-191925781 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024770
protein coding gene Chr2:169553858-169564083 (+)
CAST/EiJ MGP_CASTEiJ_G0026157
protein coding gene Chr2:182808659-182822469 (+)
CBA/J MGP_CBAJ_G0026675
protein coding gene Chr2:198868350-198878806 (+)
DBA/2J MGP_DBA2J_G0026813
protein coding gene Chr2:177956828-177967301 (+)
FVB/NJ MGP_FVBNJ_G0026779
protein coding gene Chr2:176558556-176569015 (+)
LP/J MGP_LPJ_G0026914
protein coding gene Chr2:186510340-186520866 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026798
protein coding gene Chr2:201524251-201534713 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027462
protein coding gene Chr2:184176244-184186723 (+)
PWK/PhJ MGP_PWKPhJ_G0025893
protein coding gene Chr2:175467593-175478069 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025693
protein coding gene Chr2:180671398-180681863 (+)
WSB/EiJ MGP_WSBEiJ_G0026229
protein coding gene Chr2:185146416-185156892 (+)



Homology
more
  • Human Ortholog
    LSM14B, LSM family member 14B
  • Vertebrate Orthologs
    9
  • Human Ortholog
    LSM14B, LSM family member 14B
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bA11M20.3, C20orf40, FAM61B, FT005, LSM13, RAP55B
  • Links
    NCBI Gene ID: 149986
    neXtProt AC: NX_Q9BX40
    UniProt: Q9BX40

  • Chr Location
    20q13.33; chr20:62122454-62135378 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039108 Ensembl Gene Model | MGI Sequence Detail 10479 C57BL/6J ±  kb
transcript ENSMUST00000055485 Ensembl | MGI Sequence Detail 2534 Not Applicable  
polypeptide ENSMUSP00000055036 Ensembl | MGI Sequence Detail 385 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 35
    Genomic 2
    cDNA 33

    Microarray probesets 3
References
more
  • Summaries
    All 29
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:245876 Rohacek AM, et al., ESRP1 Mutations Cause Hearing Loss due to Defects in Alternative Splicing that Disrupt Cochlear Development. Dev Cell. 2017 Nov 06;43(3):318-331.e5

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/18/2019
MGI 6.14
The Jackson Laboratory