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BC039771 Gene Detail
Summary
  • Symbol
    BC039771
  • Name
    cDNA sequence BC039771
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3040676
    NCBI Gene: 408057
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:145701195-145753672 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 71.22 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    847 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3040676
lncRNA gene Chr2:145701195-145753672 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015475
unclassified non-coding RNA gene Chr2:149809006-149901368 (+)
A/J MGP_AJ_G0015452
unclassified non-coding RNA gene Chr2:143766077-143844268 (+)
AKR/J MGP_AKRJ_G0015416
unclassified non-coding RNA gene Chr2:147916906-148013011 (+)
BALB/cJ MGP_BALBcJ_G0015415
unclassified non-coding RNA gene Chr2:144193714-144273518 (+)
C3H/HeJ MGP_C3HHeJ_G0015238
unclassified non-coding RNA gene Chr2:148426398-148507796 (+)
C57BL/6NJ MGP_C57BL6NJ_G0015869
unclassified non-coding RNA gene Chr2:154280584-154356147 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013607
unclassified non-coding RNA gene Chr2:137900631-137974614 (+)
CAST/EiJ MGP_CASTEiJ_G0014790
unclassified non-coding RNA gene Chr2:148759592-148849382 (+)
CBA/J MGP_CBAJ_G0015219
unclassified non-coding RNA gene Chr2:159858314-159950517 (+)
DBA/2J MGP_DBA2J_G0015313
unclassified non-coding RNA gene Chr2:143056408-143141644 (+)
FVB/NJ MGP_FVBNJ_G0015320
unclassified non-coding RNA gene Chr2:141605184-141681529 (+)
LP/J MGP_LPJ_G0015391
unclassified non-coding RNA gene Chr2:150007369-150101852 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015344
unclassified non-coding RNA gene Chr2:164078680-164159291 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0015909
unclassified non-coding RNA gene Chr2:147918885-148011001 (+)
PWK/PhJ MGP_PWKPhJ_G0014578
unclassified non-coding RNA gene Chr2:142728377-142813089 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014366
unclassified non-coding RNA gene Chr2:146925213-147006666 (+)
WSB/EiJ MGP_WSBEiJ_G0014897
unclassified non-coding RNA gene Chr2:148868392-148955396 (+)



Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving BC039771
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 408057 NCBI Gene Model | MGI Sequence Detail 52478 C57BL/6J ±  kb
transcript NR_033220 RefSeq | MGI Sequence Detail 2084 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6
References
more
  • Summaries
    All 11
    Developmental Gene Expression 1
    Phenotypes 3
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/04/2019
MGI 6.14
The Jackson Laboratory