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BC005561 Gene Detail
Summary
  • Symbol
    BC005561
  • Name
    cDNA sequence BC005561
  • Feature Type
    protein coding gene
  • IDs
    MGI:3040669
    NCBI Gene: 100042165
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:104508352-104522383 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 50.68 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    142 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3040669
protein coding gene Chr5:104508352-104522611 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029816
protein coding gene Chr5:106188207-106202476 (+)
A/J MGP_AJ_G0029780
protein coding gene Chr5:102204653-102218913 (+)
AKR/J MGP_AKRJ_G0029728
protein coding gene Chr5:105514881-105529140 (+)
BALB/cJ MGP_BALBcJ_G0029792
protein coding gene Chr5:103264445-103278705 (+)
C3H/HeJ MGP_C3HHeJ_G0029514
protein coding gene Chr5:105907085-105921345 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030247
protein coding gene Chr5:110544107-110558366 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027482
protein coding gene Chr5:97310175-97324098 (+)
CAST/EiJ MGP_CASTEiJ_G0028926
protein coding gene Chr5:104624118-104639208 (+)
CBA/J MGP_CBAJ_G0029485
protein coding gene Chr5:114384688-114398948 (+)
DBA/2J MGP_DBA2J_G0029629
protein coding gene Chr5:102404431-102429443 (+)
FVB/NJ MGP_FVBNJ_G0029588
protein coding gene Chr5:101175464-101189724 (+)
LP/J MGP_LPJ_G0029717
protein coding gene Chr5:106792381-106806640 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029617
protein coding gene Chr5:119293351-119308484 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030280
protein coding gene Chr5:105026261-105040521 (+)
PWK/PhJ MGP_PWKPhJ_G0028643
protein coding gene Chr5:100845046-100859411 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028479
protein coding gene Chr5:102689537-102704011 (+)
WSB/EiJ MGP_WSBEiJ_G0029004
protein coding gene Chr5:105416927-105431181 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 100042165 NCBI Gene Model | MGI Sequence Detail 14032 C57BL/6J ±  kb
transcript NM_001166581 RefSeq | MGI Sequence Detail 5181 C57BL/6  
polypeptide NP_001160053 RefSeq | MGI Sequence Detail 1589 C57BL/6  
For the selected sequence
Protein
Information
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  • UniProt
    3 Sequences
  • InterPro Domains
    IPR040007 THO complex subunit 2
    IPR032302 THO complex subunit 2, N-terminal domain
    IPR021418 THO complex, subunitTHOC2, C-terminal
    IPR021726 THO complex, subunitTHOC2, N-terminal
Molecular
Reagents
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  • All nucleic 57
    cDNA 57

    Microarray probesets 2
References
more
  • Summaries
    All 28
    Developmental Gene Expression 2
    Gene Ontology 2
    Phenotypes 9
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory