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Fam180a Gene Detail
Summary
  • Symbol
    Fam180a
  • Name
    family with sequence similarity 180, member A
  • Feature Type
    protein coding gene
  • IDs
    MGI:3039626
    NCBI Gene: 208164
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:35312746-35326141 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 15.27 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    136 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3039626
protein coding gene Chr6:35312668-35326141 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030571
protein coding gene Chr6:33464197-33476889 (-)
A/J MGP_AJ_G0030544
protein coding gene Chr6:32007906-32020733 (-)
AKR/J MGP_AKRJ_G0030471
protein coding gene Chr6:33084905-33097813 (-)
BALB/cJ MGP_BALBcJ_G0030554
protein coding gene Chr6:32197828-32211203 (-)
C3H/HeJ MGP_C3HHeJ_G0030267
protein coding gene Chr6:33053183-33067274 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031008
protein coding gene Chr6:34282062-34296916 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028220
protein coding gene Chr6:30092377-30105142 (-)
CAST/EiJ MGP_CASTEiJ_G0029669
protein coding gene Chr6:32897361-32910126 (-)
CBA/J MGP_CBAJ_G0030245
protein coding gene Chr6:35635537-35650872 (-)
DBA/2J MGP_DBA2J_G0030389
protein coding gene Chr6:31883617-31896698 (-)
FVB/NJ MGP_FVBNJ_G0030343
protein coding gene Chr6:31683667-31697303 (-)
LP/J MGP_LPJ_G0030476
protein coding gene Chr6:33561906-33575787 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030379
protein coding gene Chr6:37919642-37933749 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031038
protein coding gene Chr6:32965236-32978106 (-)
PWK/PhJ MGP_PWKPhJ_G0029383
protein coding gene Chr6:31523098-31535829 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029219
protein coding gene Chr6:32663122-32676991 (-)
WSB/EiJ MGP_WSBEiJ_G0029745
protein coding gene Chr6:32916599-32929288 (-)



Homology
more
  • Human Ortholog
    FAM180A, family with sequence similarity 180 member A
  • Vertebrate Orthologs
    10
  • Human Ortholog
    FAM180A, family with sequence similarity 180 member A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    UNQ1940
  • Links
    NCBI Gene ID: 389558
    neXtProt AC: NX_Q6UWF9
    UniProt: Q6UWF9

  • Chr Location
    7q33; chr7:135729598-135748869 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 208164 NCBI Gene Model | MGI Sequence Detail 13396 C57BL/6J ±  kb
transcript NM_173375 RefSeq | MGI Sequence Detail 1531 C57BL/6  
polypeptide Q8BR21 UniProt | EBI | MGI Sequence Detail 173 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 1
References
more
  • Summaries
    All 21
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory