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BC018473 Gene Detail
Summary
  • Symbol
    BC018473
  • Name
    cDNA sequence BC018473
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3039625
    NCBI Gene: 193217
  • Alliance
    gene page
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:116642993-116648709 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 81.49 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    44 from dbSNP Build 142
  • Strain Annotations
    8
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3039625
 lncRNA gene Chr11:116642993-116650199 (+)
129S1/SvImJ MGP_129S1SvImJ_G0003104
 antisense lncRNA gene Chr11:120913054-120920193 (+)
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0003211
 antisense lncRNA gene Chr11:124603403-124610609 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002993
 antisense lncRNA gene Chr11:120802611-120809752 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0003046
 antisense lncRNA gene Chr11:114556234-114563377 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0003035
 antisense lncRNA gene Chr11:128542507-128562973 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003215
 antisense lncRNA gene Chr11:119740471-119747611 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0003024
 antisense lncRNA gene Chr11:119683597-119695842 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    86
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 193217 NCBI Gene Model | MGI Sequence Detail 5717 C57BL/6J ±  kb
transcript NR_003364 RefSeq | MGI Sequence Detail 3263 C57BL/6  
polypeptide Q3TYN7 UniProt | EBI | MGI Sequence Detail 111 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 86
    cDNA 86

    Microarray probesets 4
References
more
  • Summaries
    All 15
    Gene Ontology 1
  • Earliest
    J:76636 Stegalkina SS, et al., Transcription originating in the long terminal repeats of the endogenous mouse mammary tumor virus MTV-3 is activated in Stat5a-null mice and picks Up hitchhiking exons. J Virol. 1999 Oct;73(10):8669-76
  • Latest
    J:190322 Archambaud C, et al., Impact of lactobacilli on orally acquired listeriosis. Proc Natl Acad Sci U S A. 2012 Oct 9;109(41):16684-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory