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Ecm2
Gene Detail
Symbol

Name
ID
Ecm2
extracellular matrix protein 2, female organ and adipocyte specific
MGI:3039578
Synonyms
9030618O22Rik, tenonectin
Feature Type
protein coding gene
Genetic Map
Chromosome 13
25.29 cM, cytoband B1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr13:49504810-49532789 bp, + strand
From NCBI annotation of GRCm38

  27980 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:1064  Vertebrate Homology Class
1 human; 1 mouse; 2 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

HCOP human homology predictions: ECM2
Gene Tree: Ecm2

Human
homologs
ECM2, extracellular matrix protein 2, female organ and adipocyte specific
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 1842
neXtProt AC: NX_O94769

Human Chr (Location): 9q22.3; chr9:92493547-92536092 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(1) Targeted(3)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Ecm2 interacts with 232 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (2 records)
Data Summary: Results (45)    Tissues (11)    Images (21)    Tissue x Stage Matrix (view)
Assay TypeResults
Immunohistochemistry 2
RNA in situ 43
cDNA source data(27)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase LOC100493053 ; ZFIN ecm2    NEW 
Molecular
reagents
All nucleic(27) cDNA(27)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000043631 (Evidence)
Entrez Gene 407800 (Evidence)
UniGene 386931
DFCI TC1582946, TC1591454
DoTS DT.101154863, DT.481119, DT.55202215
NIA Mouse Gene Index U075583
Consensus CDS Project CCDS26502.1
International Mouse Phenotyping Consortium Status Ecm2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 407800 NCBI Gene Model | MGI Sequence Detail 27980 C57BL/6J ±  kb
transcript NM_001012324 RefSeq | MGI Sequence Detail 3626 Not Specified 
polypeptide Q5FW85 UniProt | EBI | MGI Sequence Detail 670 Not Applicable 

For the selected sequences
All sequences(24) RefSeq(2) UniProt(2)
Polymorphisms
SNPs within 2kb(47 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001611 Leucine-rich repeat
InterPro IPR026906 Leucine rich repeat 5
InterPro IPR001007 VWFC domain
Protein Ontology PR:000006880 extracellular matrix protein 2
Graphical View of Protein Domain Structure
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(28)
Other
accession IDs
MGI:1918796

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory