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Ecm2
Gene Detail
 Symbol
Name
ID
Ecm2
extracellular matrix protein 2, female organ and adipocyte specific
MGI:3039578
Synonyms 9030618O22Rik, tenonectin
Feature Type protein coding gene
Genetic Map
Chromosome 13
25.29 cM, cytoband B1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr13:49504810-49532789 bp, + strand
From NCBI annotation of GRCm38

  27980 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:1064  Vertebrate Homology Class
1 human; 1 mouse; 2 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Ecm2

Human
homologs
Human Homolog ECM2, extracellular matrix protein 2, female organ and adipocyte specific
NCBI Gene ID 1842
neXtProt AC  NX_O94769
Human Chr (Location)  9q22.3; chr9:92493547-92536092 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(1) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ecm2 interacts with 232 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process extracellular matrix organization, positive regulation of cell-substrate adhesion
Component extracellular matrix, extracellular region, ...
Function collagen binding, collagen V binding, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (45)    Tissues (11)    Images (21)
Theiler Stages: 23, 24, 28
Assay TypeResults
Immunohistochemistry 2
RNA in situ 43
cDNA source data(27)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(27) cDNA(27)
Microarray probesets(2)
Other database
links
Ensembl Gene ModelENSMUSG00000043631 (Evidence)
Entrez Gene407800 (Evidence)
UniGene386931
DFCITC1582946, TC1591454
DoTSDT.101154863, DT.481119, DT.55202215
NIA Mouse Gene IndexU075583
Consensus CDS ProjectCCDS26502.1
International Mouse Knockout Project StatusEcm2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 407800 NCBI Gene Model | MGI Sequence Detail 27980 C57BL/6J ±  kb
transcript NM_001012324 RefSeq | MGI Sequence Detail 3626 Not Specified 
polypeptide Q5FW85 UniProt | EBI | MGI Sequence Detail 670 Not Applicable 

For the selected sequences
All sequences(24) RefSeq(2) UniProt(2)
Polymorphisms SNPs within 2kb(47 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001611 Leucine-rich repeat
InterPro IPR026906 Leucine rich repeat 5
InterPro IPR001007 von Willebrand factor, type C
Protein Ontology PR:000006880 extracellular matrix protein 2
Graphical View of Protein Domain Structure
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(30)
Other
accession IDs
MGI:1918796

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory