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BC039966 Gene Detail
Summary
  • Symbol
    BC039966
  • Name
    cDNA sequence BC039966
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3039570
    NCBI Gene: 407793
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:154032912-154034933 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 83.78 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    47 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3039570
 lncRNA gene Chr4:154032090-154035000 (-)
129S1/SvImJ MGP_129S1SvImJ_G0004013
 antisense lncRNA gene Chr4:158177970-158180840 (-)
A/J MGP_AJ_G0003994
 antisense lncRNA gene Chr4:151548429-151554609 (-)
AKR/J MGP_AKRJ_G0003971
 antisense lncRNA gene Chr4:155680539-155684779 (-)
BALB/cJ MGP_BALBcJ_G0003980
 antisense lncRNA gene Chr4:152017288-152020158 (-)
C3H/HeJ MGP_C3HHeJ_G0003927
 antisense lncRNA gene Chr4:156212733-156220706 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004129
 antisense lncRNA gene Chr4:163841031-163843901 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003610
 antisense lncRNA gene Chr4:143852615-143855477 (-)
CAST/EiJ MGP_CASTEiJ_G0003890
 antisense lncRNA gene Chr4:153614389-153617275 (-)
CBA/J MGP_CBAJ_G0003920
 antisense lncRNA gene Chr4:168766725-168772089 (-)
DBA/2J MGP_DBA2J_G0003936
 antisense lncRNA gene Chr4:151571461-151578779 (-)
FVB/NJ MGP_FVBNJ_G0003955
 antisense lncRNA gene Chr4:150771666-150775268 (-)
LP/J MGP_LPJ_G0004016
 antisense lncRNA gene Chr4:158095762-158098632 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0003943
 antisense lncRNA gene Chr4:171682990-171688993 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004123
 antisense lncRNA gene Chr4:156247844-156250711 (-)
PWK/PhJ MGP_PWKPhJ_G0003844
 antisense lncRNA gene Chr4:147651631-147654619 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003789
 antisense lncRNA gene Chr4:150531289-150536135 (-)
WSB/EiJ MGP_WSBEiJ_G0003926
 antisense lncRNA gene Chr4:156410975-156413844 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 407793 NCBI Gene Model | MGI Sequence Detail 2022 C57BL/6J ±  kb
transcript NR_040670 RefSeq | MGI Sequence Detail 522 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5
References
more
  • Summaries
    All 14
    Phenotypes 3
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory