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BC048644 Gene Detail
Summary
  • Symbol
    BC048644
  • Name
    cDNA sequence BC048644
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3039566
    NCBI Gene: 407789
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:122634572-122643620 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 70.81 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    237 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3039566
 lncRNA gene Chr8:122634572-122646429 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004595
 antisense lncRNA gene Chr8:125427880-125440415 (+)
A/J MGP_AJ_G0004575
 antisense lncRNA gene Chr8:120224213-120234267 (+)
AKR/J MGP_AKRJ_G0004559
 antisense lncRNA gene Chr8:123751387-123761433 (+)
BALB/cJ MGP_BALBcJ_G0004560
 antisense lncRNA gene Chr8:120430157-120440212 (+)
C3H/HeJ MGP_C3HHeJ_G0004509
 antisense lncRNA gene Chr8:124443258-124453312 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004709
 antisense lncRNA gene Chr8:129610847-129621243 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004160
 antisense lncRNA gene Chr8:113058993-113061014 (+)
CAST/EiJ MGP_CASTEiJ_G0004467
 antisense lncRNA gene Chr8:124495755-124509174 (+)
CBA/J MGP_CBAJ_G0004503
 antisense lncRNA gene Chr8:134391139-134393130 (+)
DBA/2J MGP_DBA2J_G0004518
 antisense lncRNA gene Chr8:119422023-119432390 (+)
FVB/NJ MGP_FVBNJ_G0004535
 antisense lncRNA gene Chr8:118531805-118543566 (+)
LP/J MGP_LPJ_G0004599
 antisense lncRNA gene Chr8:125552741-125563131 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004524
 antisense lncRNA gene Chr8:136591405-136603613 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004709
 antisense lncRNA gene Chr8:123919982-123930856 (+)
PWK/PhJ MGP_PWKPhJ_G0004420
 antisense lncRNA gene Chr8:119226743-119237604 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004361
 antisense lncRNA gene Chr8:122629701-122640225 (+)
WSB/EiJ MGP_WSBEiJ_G0004508
 antisense lncRNA gene Chr8:124671603-124683409 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    27
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 407789 NCBI Gene Model | MGI Sequence Detail 9049 C57BL/6J ±  kb
transcript NR_167716 RefSeq | MGI Sequence Detail 713 C57BL/6  
polypeptide Q3V0I3 UniProt | EBI | MGI Sequence Detail 230 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR016133 Insect cysteine-rich antifreeze protein
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5
References
more
  • Summaries
    All 10
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory