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Taf9b
Gene Detail
Symbol

Name
ID
Taf9b
TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor
MGI:3039562
Synonyms
Taf9l
Feature Type
protein coding gene
Genetic Map
Chromosome X
47.36 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
ChrX:106206883-106221158 bp, - strand
From VEGA annotation of GRCm38

  14276 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:47969  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Protein SuperFamily: transcription initiation factor IID, TAF9 subunit
Gene Tree: Taf9b

Human
homologs
Human Homolog TAF9B, TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa
NCBI Gene ID 51616
neXtProt AC  NX_Q9HBM6
Human Synonyms  DN7, DN-7, TAF9L, TAFII31L, TFIID-31
Human Chr (Location)  Xq13.1-q21.1; chrX:78129748-78140998 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(1) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
 
Male chimeras hemizygous for a gene trapped allele appear normal at E9.5.
 
Phenotype Images(1)
Interactions
Taf9b interacts with 259 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (1 records)
Data Summary: Results (94)    Tissues (94)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 94
cDNA source data(30)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(31) cDNA(30) Primer pair(1)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000018278 (Evidence)
Ensembl Gene ModelENSMUSG00000047242 (Evidence)
Entrez Gene407786 (Evidence)
UniGene19440
DFCITC1580637, TC1642086
DoTSDT.111032215, DT.486077
NIA Mouse Gene IndexU039626
Consensus CDS ProjectCCDS30340.1, CCDS53170.1
International Mouse Knockout Project StatusTaf9b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018278 VEGA Gene Model | MGI Sequence Detail 14276 C57BL/6J ±  kb
transcript OTTMUST00000044170 VEGA | MGI Sequence Detail 2512 Not Applicable 
polypeptide OTTMUSP00000019857 VEGA | MGI Sequence Detail 293 Not Applicable 

For the selected sequences
All sequences(38) RefSeq(4) UniProt(5)
Polymorphisms
SNPs within 2kb(52 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009072 Histone-fold
InterPro IPR003162 Transcription factor TAFII-31
Protein Ontology PR:000016037 transcription initiation factor TFIID subunit 9B
References
(Earliest) J:91812 Stryke D, et al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. 2003 Jan 1;31(1):278-81
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(35)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory