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Taf9b Gene Detail
Summary
  • Symbol
    Taf9b
  • Name
    TATA-box binding protein associated factor 9B
  • Synonyms
    Taf9l
  • Feature Type
    protein coding gene
  • IDs
    MGI:3039562
    NCBI Gene: 407786
  • Gene Overview
    MyGene.info: TAF9B
Location & Maps
more
  • Sequence Map
    ChrX:106206883-106221158 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      14276 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome X, 47.36 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    TAF9B, TATA-box binding protein associated factor 9b
  • Vertebrate Orthologs
    7
  • Human Ortholog
    TAF9B, TATA-box binding protein associated factor 9b
    Orthology source: HomoloGene
  • Synonyms
    DN7, DN-7, TAF9L, TAFII31L, TFIID-31
  • Links
    NCBI Gene ID: 51616
    neXtProt AC: NX_Q9HBM6

  • Chr Location
    Xq13.1-q21.1; chrX:78129748-78139682 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 images
    7 phenotype references
  • All Mutations and Alleles
    3
  • Gene trapped
    1
  • Targeted
    2
  • Incidental Mutations
Male chimeras hemizygous for a gene trapped allele appear normal at E9.5.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018278 VEGA Gene Model | MGI Sequence Detail 14276 C57BL/6J ±  kb
transcript OTTMUST00000044170 VEGA | MGI Sequence Detail 2512 Not Applicable  
polypeptide OTTMUSP00000019857 VEGA | MGI Sequence Detail 293 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    52 from dbSNP Build 142
Protein
Information
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  • UniProt
    3 Sequences
  • InterPro Domains
    IPR009072 Histone-fold
    IPR003162 Transcription initiation factor TAFII31
Molecular
Reagents
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  • All nucleic 31
    cDNA 30
    Primer pair 1

    Microarray probesets 4
References
more
  • Summaries
    All 30
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:91812 Stryke D, et al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. 2003 Jan 1;31(1):278-81
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/15/2016
MGI 6.04
The Jackson Laboratory