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Mmp27
Gene Detail
Symbol

Name
ID
Mmp27
matrix metallopeptidase 27
MGI:3039232
Synonyms
LOC234911
Feature Type
protein coding gene
Genetic Map
Chromosome 9
2.46 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr9:7571396-7581885 bp, + strand
From VEGA annotation of GRCm38

  10490 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:23345  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

HCOP human homology predictions: MMP27
Protein SuperFamily: matrix metalloproteinase, stromelysin type

Human
homologs
MMP27, matrix metallopeptidase 27
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 64066
neXtProt AC: NX_Q9H306

Human Synonyms: MMP-27

Human Chr (Location): 11q24; chr11:102691510-102705755 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Mmp27 interacts with 112 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component extrinsic component of endoplasmic reticulum membrane
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(3)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: GEISHA MMP27    NEW 
Molecular
reagents
All nucleic(4) cDNA(3) Other(1)
Microarray probesets(1)
Other database
links
VEGA Gene Model OTTMUSG00000031478 (Evidence)
Ensembl Gene Model ENSMUSG00000070323 (Evidence), ENSMUSG00000101577 (Evidence)
Entrez Gene 234911 (Evidence)
UniGene 334940
DoTS DT.101302082, DT.110627970
NIA Mouse Gene Index U192456
Consensus CDS Project CCDS40530.1, CCDS80952.1
International Mouse Phenotyping Consortium Status Mmp27
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031478 VEGA Gene Model | MGI Sequence Detail 10490 C57BL/6J ±  kb
transcript OTTMUST00000077986 VEGA | MGI Sequence Detail 1654 Not Applicable 
polypeptide OTTMUSP00000041377 VEGA | MGI Sequence Detail 551 Not Applicable 

For the selected sequences
All sequences(37) RefSeq(10) UniProt(3)
Polymorphisms
SNPs within 2kb(49 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR018486 Hemopexin, conserved site
InterPro IPR000585 Hemopexin-like domain
InterPro IPR018487 Hemopexin-like repeats
InterPro IPR028732 Matrix metalloproteinase-27
InterPro IPR024079 Metallopeptidase, catalytic domain
InterPro IPR021190 Peptidase M10A
InterPro IPR021158 Peptidase M10A, cysteine switch, zinc binding site
InterPro IPR016293 Peptidase M10A, stromelysin-type
InterPro IPR001818 Peptidase M10, metallopeptidase
InterPro IPR006026 Peptidase, metallopeptidase
InterPro IPR002477 Peptidoglycan binding-like
Protein Ontology PR:000010486 matrix metalloproteinase-27
References
(Earliest) J:89162 Nuttall RK, et al., Expression analysis of the entire MMP and TIMP gene families during mouse tissue development. FEBS Lett. 2004 Apr 9;563(1-3):129-34
(Latest) J:213098 Tocchi A, et al., Functional interactions between matrix metalloproteinases and glycosaminoglycans. FEBS J. 2013 May;280(10):2332-41
All references(23)
Other
accession IDs
MGI:2685026

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory