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Atf1-ps Pseudogene Detail
Summary
  • Symbol
    Atf1-ps
  • Name
    activating transcription factor 1, pseudogene
  • Synonyms
    Gm1862, LOC278037
Location &
Maps
more
  • Sequence Map
    ChrX:53883611-53884420 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 30.06 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    15 from dbSNP Build 142
  • Strain Annotations
    2
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3037720
pseudogene ChrX:53883489-53884513 (-)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0014850
pseudogene ChrX:50344133-50347089 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    ATF1, activating transcription factor 1
  • Vertebrate Orthologs
    11
  • Human Ortholog
    ATF1, activating transcription factor 1
    Orthology source: HomoloGene
  • Synonyms
    EWS-ATF1, FUS/ATF-1, TREB36
  • Links
    NCBI Gene ID: 466
    neXtProt AC: NX_P18846
    UniProt: P18846

  • Chr Location
    12q13.12; chr12:50763682-50821162 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 3790
    1 human;2 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ATF1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000080968 Ensembl Gene Model | MGI Sequence Detail 810 C57BL/6J ±  kb
transcript ENSMUST00000120608 Ensembl | MGI Sequence Detail 810 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 7
    Phenotypes 2
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory