Tex13c3 Gene Detail

Summary

• Symbol
  Tex13c3
• Name
  TEX13 family member C3
• Synonyms
  BC049702, LOC278255, MGC:58623

• Feature Type
  protein coding gene
• IDs
  MGI:3037654
  NCBI Gene: 278255
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:19345659-19347558 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 14.88 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  33 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3037654	protein coding gene	ChrX:19345659-19347558 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0035649	protein coding gene	ChrX:33396335-33398549 (+)
AKR/J	MGP_AKRJ_G0035496	protein coding gene	ChrX:14897266-14899151 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0035274	protein coding gene	ChrX:14526847-14528702 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0036092	protein coding gene	ChrX:14700804-14702634 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0033015	protein coding gene	ChrX:31725823-31727698 (+)
CAST/EiJ	MGP_CASTEiJ_G0034628	protein coding gene	ChrX:21715131-21717570 (+)
CBA/J	MGP_CBAJ_G0035243	protein coding gene	ChrX:15424068-15425861 (-)
DBA/2J	MGP_DBA2J_G0035395	protein coding gene	ChrX:14238882-14240878 (-)
FVB/NJ	MGP_FVBNJ_G0035414	protein coding gene	ChrX:32976595-32979224 (+)
LP/J	MGP_LPJ_G0035477	protein coding gene	ChrX:14625774-14627624 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0036099	protein coding gene	ChrX:14278897-14280901 (-)
PWK/PhJ	MGP_PWKPhJ_G0034329	protein coding gene	ChrX:21273435-21274212 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0034106	protein coding gene	ChrX:14289733-14291646 (-)
WSB/EiJ	no annotation

Homology

• Human Ortholog
  TEX13C, TEX13 family member C

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TEX13C, TEX13 family member C
  
• Links
  HGNC:52277

  NCBI Gene ID: 100129520

  neXtProt AC: NX_A0A0J9YWL9

  UniProt: A0A0J9YWL9

  
  
• Chr Location
  Xq25; chrX:125319871-125325216 (+)  GRCh38

---

• Human Ortholog
  TEX13D, TEX13 family member D
  
• Links
  HGNC:52278

  NCBI Gene ID: 100132015

  UniProt: A0A0J9YY54

  
  
• Chr Location
  Xq25; chrX:124246249-124336863 (+)  GRCh38

---

• MGI Vertebrate Homology
  Tex13c3 stringent orthology
  2 human;1 mouse
  
• HCOP
  vertebrate homology predictions: TEX13C, TEX13D
• Gene Tree
  Tex13c3
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS30039.1

• Ensembl
  ENSMUSG00000068149 (Evidence)
• NCBI Gene
  278255

Representative Sequences			Length	Strain/Species
genomic	278255	NCBI Gene Model | MGI Sequence Detail	1900	C57BL/6J
transcript	NM_207524	RefSeq | MGI Sequence Detail	880	Not Specified
polypeptide	NP_997407	RefSeq | MGI Sequence Detail	219	Not Specified

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR028193 Testis-expressed sequence 13 protein family

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2685566

References

• Summaries
  All 15
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582