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Clec4a1 Gene Detail
Summary
  • Symbol
    Clec4a1
  • Name
    C-type lectin domain family 4, member a1
  • Synonyms
    mDcir4
  • Feature Type
    protein coding gene
  • IDs
    MGI:3036291
    NCBI Gene: 269799
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:122921848-122934619 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 58.01 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    76 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3036291
protein coding gene Chr6:122921848-122934619 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031236
protein coding gene Chr6:126043001-126055827 (+)
A/J MGP_AJ_G0031205
protein coding gene Chr6:121264775-121278149 (+)
AKR/J MGP_AKRJ_G0031135
protein coding gene Chr6:124626174-124638940 (+)
BALB/cJ MGP_BALBcJ_G0031215
protein coding gene Chr6:120976651-120993259 (+)
C3H/HeJ MGP_C3HHeJ_G0030934
protein coding gene Chr6:124587049-124601050 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031674
protein coding gene Chr6:129371478-129385872 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0030323
protein coding gene Chr6:124855312-124868376 (+)
CBA/J MGP_CBAJ_G0030897
protein coding gene Chr6:134413990-134426757 (+)
DBA/2J MGP_DBA2J_G0031053
protein coding gene Chr6:120196037-120208967 (+)
FVB/NJ MGP_FVBNJ_G0031006
protein coding gene Chr6:119134464-119148229 (+)
LP/J MGP_LPJ_G0031134
protein coding gene Chr6:126232504-126249533 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031041
protein coding gene Chr6:138367064-138388515 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031704
protein coding gene Chr6:124511902-124524673 (+)
PWK/PhJ MGP_PWKPhJ_G0030037
protein coding gene Chr6:119036349-119049486 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029865
protein coding gene Chr6:122655376-122668423 (+)
WSB/EiJ MGP_WSBEiJ_G0030405
protein coding gene Chr6:124825092-124838850 (+)



Homology
more
  • Human Ortholog
    ZNF705A, zinc finger protein 705A
  • Vertebrate Orthologs
    4
  • Human Ortholog
    ZNF705A, zinc finger protein 705A
    Orthology source: HomoloGene
  • Links
    NCBI Gene ID: 440077
    neXtProt AC: NX_Q6ZN79
    UniProt: Q6ZN79

  • Chr Location
    12p13.31; chr12:8172554-8180046 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 269799 NCBI Gene Model | MGI Sequence Detail 12772 C57BL/6J ±  kb
transcript NM_199311 RefSeq | MGI Sequence Detail 1592 C57BL/6  
polypeptide NP_955015 RefSeq | MGI Sequence Detail 245 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR033989 CD209-like, C-type lectin-like domain
    IPR016187 C-type lectin fold
    IPR001304 C-type lectin-like
    IPR016186 C-type lectin-like/link domain superfamily
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 1
References
more
  • Summaries
    All 15
    Phenotypes 2
  • Earliest
    J:93065 Flornes LM, et al., Identification of lectin-like receptors expressed by antigen presenting cells and neutrophils and their mapping to a novel gene complex. Immunogenetics. 2004 Oct;56(7):506-17
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/11/2019
MGI 6.14
The Jackson Laboratory