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Traf3ip2os1 Gene Detail
Summary
  • Symbol
    Traf3ip2os1
  • Name
    TRAF3 interacting protein 2, opposite strand transcript 1
  • Synonyms
    betaFaar, E130307A14Rik
Location &
Maps
more
  • Sequence Map
    Chr10:39497407-39608003 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 20.88 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2603 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3036287
 lncRNA gene Chr10:39497407-39608683 (-)
129S1/SvImJ ENSMUSG00200009486
 lncRNA gene Chr10:36352615-36463215 (-)
A/J ENSMUSG00195017864
 lncRNA gene Chr10:36655278-36765921 (-)
AKR/J ENSMUSG00220028944
 lncRNA gene Chr10:36331939-36442545 (-)
BALB/cJ ENSMUSG00180016927
 lncRNA gene Chr10:36740556-36851174 (-)
C3H/HeJ ENSMUSG00175012034
 lncRNA gene Chr10:36534923-36645526 (-)
C57BL/6NJ ENSMUSG00215010748
 lncRNA gene Chr10:36285427-36396042 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013273
 unclassified non-coding RNA gene Chr10:35107914-35216852 (-)
CAST/EiJ ENSTCUG00005029839
 lncRNA gene Chr10:36739420-36851876 (-)
CBA/J ENSMUSG00210026045
 lncRNA gene Chr10:36428374-36538987 (-)
DBA/2J ENSMUSG00185007558
 lncRNA gene Chr10:36580956-36691556 (-)
FVB/NJ ENSMUSG00205014829
 lncRNA gene Chr10:36495539-36606133 (-)
JF1/MsJ ENSUMUG00000034431
 lncRNA gene Chr10:36346927-36458403 (-)
LP/J ENSMUSG00230016584
 lncRNA gene Chr10:38341668-38452264 (-)
NOD/ShiLtJ ENSMUSG00190032845
 lncRNA gene Chr10:36709279-36819888 (-)
NZO/HlLtJ ENSMUSG00225018123
 lncRNA gene Chr10:42668525-42779112 (-)
PWK/PhJ ENSLUMG00010008312
 lncRNA gene Chr10:36467455-36578718 (-)
SPRET/EiJ ENSMSPG00010020704
 lncRNA gene Chr10:37501075-37611003 (-)
WSB/EiJ ENSIUOG00005015237
 lncRNA gene Chr10:36248491-36359051 (-)



Homology
more
  • Human Ortholog
    TRAF3IP2-AS1, TRAF3IP2 antisense RNA 1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAF3IP2-AS1, TRAF3IP2 antisense RNA 1
  • Synonyms
    BetaFAAR, C6orf3, C6UAS, NCRNA00248, TRAF3IP2-AS2
  • Links
    NCBI Gene ID: 643749

  • Chr Location
    6q21; chr6:111483389-111602295 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
  • All Mutations and Alleles
    12
  • Chemically induced (other)
    1
  • Gene trapped
    10
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Traf3ip2os1
  • Find Mice (IMSR)
    7 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    26
Sequences &
Gene Models
less
  • All Sequences
    77
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 327744 NCBI Gene Model | MGI Sequence Detail 110597 C57BL/6J ±  kb
transcript NR_038037 RefSeq | MGI Sequence Detail 1664 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 26
    cDNA 26

    Microarray probesets 3
Other
Accession IDs
less
MGI:2143592, MGI:8348363
References
more
  • Summaries
    All 29
    Phenotypes 11
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:340201 Zhang F, et al., The long non-coding RNA betaFaar regulates islet beta-cell function and survival during obesity in mice. Nat Commun. 2021 Jun 28;12(1):3997
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory