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Spata5l1 Gene Detail
Summary
  • Symbol
    Spata5l1
  • Name
    spermatogenesis associated 5-like 1
  • Synonyms
    C130039A10Rik
Location & Maps
more
  • Sequence Map
    Chr2:122630625-122632930 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      2306 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 60.64 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    SPATA5L1, spermatogenesis associated 5 like 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SPATA5L1, spermatogenesis associated 5 like 1
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 79029
    neXtProt AC: NX_Q9BVQ7

  • Chr Location
    15q21.1; chr15:45402273-45421419 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Gene trapped
    3
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Spata5l1
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015668 VEGA Gene Model | MGI Sequence Detail 2306 C57BL/6J ±  kb
transcript OTTMUST00000037228 VEGA | MGI Sequence Detail 1526 Not Applicable  
polypeptide NP_001028428 RefSeq | MGI Sequence Detail 747 C57BL/6  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    39 from dbSNP Build 142
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR003593 AAA+ ATPase domain
    IPR003959 ATPase, AAA-type, core
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
Molecular
Reagents
less
  • All nucleic 10
    cDNA 9
    Primer pair 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:3052755
References
more
  • Summaries
    All 19
    Developmental Gene Expression 2
    Phenotypes 5
  • Earliest
    J:68323 Carninci P, et al., Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Genome Res. 2000 Oct;10(10):1617-30
  • Latest
    J:175792 Jelcick AS, et al., Genetic variations strongly influence phenotypic outcome in the mouse retina. PLoS One. 2011;6(7):e21858

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory