About   Help   FAQ
Spata5l1 Gene Detail
Summary
  • Symbol
    Spata5l1
  • Name
    spermatogenesis associated 5-like 1
  • Synonyms
    C130039A10Rik
Location &
Maps
more
  • Sequence Map
    Chr2:122630646-122632930 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 60.64 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    39 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3036261
protein coding gene Chr2:122630625-122636478 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015463
unclassified non-coding RNA gene Chr2:125660871-125674178 (+)
A/J MGP_AJ_G0015439
unclassified non-coding RNA gene Chr2:120527592-120540937 (+)
AKR/J MGP_AKRJ_G0015403
unclassified non-coding RNA gene Chr2:123976318-123992862 (+)
BALB/cJ MGP_BALBcJ_G0015402
unclassified non-coding RNA gene Chr2:120816752-120830075 (+)
C3H/HeJ MGP_C3HHeJ_G0015225
unclassified non-coding RNA gene Chr2:124456610-124469631 (+)
C57BL/6NJ MGP_C57BL6NJ_G0015856
unclassified non-coding RNA gene Chr2:129773195-129786740 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013595
unclassified non-coding RNA gene Chr2:115453277-115466468 (+)
CAST/EiJ MGP_CASTEiJ_G0014777
unclassified non-coding RNA gene Chr2:124707339-124721128 (+)
CBA/J MGP_CBAJ_G0015206
unclassified non-coding RNA gene Chr2:134370571-134383735 (+)
DBA/2J MGP_DBA2J_G0015300
unclassified non-coding RNA gene Chr2:119957462-119970629 (+)
FVB/NJ MGP_FVBNJ_G0015307
unclassified non-coding RNA gene Chr2:118722072-118735229 (+)
LP/J MGP_LPJ_G0015378
unclassified non-coding RNA gene Chr2:125901511-125915007 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015331
unclassified non-coding RNA gene Chr2:138556483-138577051 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0015896
unclassified non-coding RNA gene Chr2:124021739-124034967 (+)
PWK/PhJ MGP_PWKPhJ_G0014565
unclassified non-coding RNA gene Chr2:119535342-119549375 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014353
unclassified non-coding RNA gene Chr2:123100398-123113657 (+)
WSB/EiJ MGP_WSBEiJ_G0014884
unclassified non-coding RNA gene Chr2:124892248-124905980 (+)



Homology
more
  • Human Ortholog
    SPATA5L1, spermatogenesis associated 5 like 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SPATA5L1, spermatogenesis associated 5 like 1
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 79029
    neXtProt AC: NX_Q9BVQ7
    UniProt: Q9BVQ7

  • Chr Location
    15q21.1; chr15:45400202-45421419 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Gene trapped
    3
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Spata5l1
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000074876 Ensembl Gene Model | MGI Sequence Detail 2285 C57BL/6J ±  kb
transcript ENSMUST00000152813 Ensembl | MGI Sequence Detail 1526 Not Applicable  
polypeptide NP_001028428 RefSeq | MGI Sequence Detail 747 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR041569 AAA ATPase, AAA+ lid domain
    IPR003593 AAA+ ATPase domain
    IPR003959 ATPase, AAA-type, core
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
Molecular
Reagents
less
  • All nucleic 10
    cDNA 9
    Primer pair 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:3052755
References
more
  • Summaries
    All 21
    Developmental Gene Expression 2
    Phenotypes 5
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:175792 Jelcick AS, et al., Genetic variations strongly influence phenotypic outcome in the mouse retina. PLoS One. 2011;6(7):e21858

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
07/29/2020
MGI 6.15
The Jackson Laboratory