Zfp939 Gene Detail

Summary

• Symbol
  Zfp939
• Name
  zinc finger protein 939
• Synonyms
  9430025M13Rik

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3036240
  NCBI Gene: 233147
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:39098903-39126853 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 25.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1083 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3036240	protein coding gene	Chr7:39098844-39127142 (+)
129S1/SvImJ	ENSMUSG00200027142	pseudogene	Chr7:26911223-26939356 (+)
A/J	ENSMUSG00195049570	pseudogene	Chr7:30606368-30633614 (+)
AKR/J	ENSMUSG00220029604	pseudogene	Chr7:17782869-17810108 (+)
BALB/cJ	ENSMUSG00180022051	pseudogene	Chr7:28196797-28224033 (+)
C3H/HeJ	ENSMUSG00175041651	pseudogene	Chr7:28403778-28431911 (+)
C57BL/6NJ	ENSMUSG00215024257	pseudogene	Chr7:27363561-27391798 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048129	pseudogene	Chr7:30328005-30356189 (+)
CBA/J	ENSMUSG00210027193	pseudogene	Chr7:28422908-28451041 (+)
DBA/2J	ENSMUSG00185051072	pseudogene	Chr7:31754429-31782648 (+)
FVB/NJ	ENSMUSG00205023513	pseudogene	Chr7:28553959-28581200 (+)
JF1/MsJ	ENSUMUG00000038586	pseudogene	Chr7:36227541-36255726 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190009042	pseudogene	Chr7:28491666-28518900 (+)
NZO/HlLtJ	ENSMUSG00225009423	pseudogene	Chr7:35790031-35818256 (+)
PWK/PhJ	ENSLUMG00010023247	pseudogene	Chr7:27260532-27288676 (+)
SPRET/EiJ	ENSMSPG00010006162	pseudogene	Chr7:27213618-27241633 (+)
WSB/EiJ	ENSIUOG00005009036	pseudogene	Chr7:28125222-28153417 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  12 strains or lines available

Expression

• cDNA Data
  12

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  75
• RefSeq
  31
• UniProt
  1

• Ensembl
  ENSMUSG00000030424 (Evidence), ENSMUSG00000121502 (Evidence)
• NCBI Gene
  233147

Representative Sequences			Length	Strain/Species
genomic	233147	NCBI Gene Model | MGI Sequence Detail	27951	C57BL/6J
transcript	NR_157256	RefSeq | MGI Sequence Detail	2490	C57BL/6
polypeptide	NP_001229950	RefSeq | MGI Sequence Detail	587	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR036236 Zinc finger C2H2 superfamily
  IPR013087 Zinc finger C2H2-type

Molecular
Reagents

• All nucleic 12

  cDNA 12

References

• Summaries
  All 14

  Phenotypes 2
• Earliest
  J:91812 Stryke D, et al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. 2003 Jan 1;31(1):278-81
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for Zfp939:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65946	Chr7:39098903-39098947 (+)	22 bp