Rsbn1l MGI Mouse Gene Detail - MGI:3036237 - round spermatid basic protein 1-like

Symbol

Rsbn1l
Name

round spermatid basic protein 1-like
Synonyms

8430412F05Rik, C330002G24Rik

Feature Type

protein coding gene
IDs

MGI:3036237
NCBI Gene: 242860
Alliance

gene page
Transcription Start Sites

4 TSS

Sequence Map

Chr5:21098026-21161396 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 5, 9.83 cM
Mapping Data

3 experiments

SNPs within 2kb

206 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3036237	protein coding gene	Chr5:21097284-21163019 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0029312	protein coding gene	Chr5:18407837-18480992 (-)
A/J	MGP_AJ_G0029277	protein coding gene	Chr5:17834831-17897867 (-)
AKR/J	MGP_AKRJ_G0029228	protein coding gene	Chr5:18511905-18574599 (-)
BALB/cJ	MGP_BALBcJ_G0029289	protein coding gene	Chr5:18262111-18326026 (-)
C3H/HeJ	MGP_C3HHeJ_G0029008	protein coding gene	Chr5:18546089-18628884 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0029742	protein coding gene	Chr5:19781816-19849420 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026981	protein coding gene	Chr5:15903177-15964357 (-)
CAST/EiJ	MGP_CASTEiJ_G0028420	protein coding gene	Chr5:17901217-17969694 (-)
CBA/J	MGP_CBAJ_G0028975	protein coding gene	Chr5:19998586-20066612 (-)
DBA/2J	MGP_DBA2J_G0029127	protein coding gene	Chr5:18110005-18175481 (-)
FVB/NJ	MGP_FVBNJ_G0029085	protein coding gene	Chr5:17525672-17588950 (-)
LP/J	MGP_LPJ_G0029211	protein coding gene	Chr5:18826629-18894881 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0029113	protein coding gene	Chr5:21317128-21384103 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0029775	protein coding gene	Chr5:18172993-18240885 (-)
PWK/PhJ	MGP_PWKPhJ_G0028143	protein coding gene	Chr5:17178964-17239954 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0027976	protein coding gene	Chr5:17538228-17601465 (-)
WSB/EiJ	MGP_WSBEiJ_G0028500	protein coding gene	Chr5:18209198-18290129 (-)

Human Ortholog

RSBN1L, round spermatid basic protein 1 like

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

RSBN1L, round spermatid basic protein 1 like
Links

HGNC:24765

NCBI Gene ID: 222194

neXtProt AC: NX_Q6PCB5

UniProt: Q6PCB5
Chr Location

7q11.23; chr7:77696459-77783022 (+) GRCh38

MGI Vertebrate Homology

Rsbn1l stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: RSBN1L
Gene Tree

Rsbn1l

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References

1 with disease annotations

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Phenotype Summary

16 phenotype references

All Mutations and Alleles

103
Chemically induced (other)

2
Gene trapped

98
Radiation induced

1
Spontaneous

1
Targeted

1
Genomic Mutations

4 involving Rsbn1l
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

57 strains or lines available

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All GO Annotations

1
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

8

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase rsbn1l

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All Sequences

42
RefSeq

4
UniProt

3
CCDS

CCDS39020.1

Ensembl

ENSMUSG00000039968 (Evidence)
NCBI Gene

242860

			Length	Strain/Species	Flank
genomic	ENSMUSG00000039968	Ensembl Gene Model \| MGI Sequence Detail	63371	C57BL/6J	± kb
transcript	ENSMUST00000036489	Ensembl \| MGI Sequence Detail	5550	Not Applicable
polypeptide	ENSMUSP00000039482	Ensembl \| MGI Sequence Detail	821	Not Applicable

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UniProt

3 Sequences
InterPro Domains

IPR026306 RSBN1/Dpy-21

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All nucleic 9

Genomic 1

cDNA 8

Microarray probesets 2

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MGI:1924727, MGI:2140880

Summaries

All 35

Diseases 1

Gene Ontology 1

Phenotypes 16
Earliest

J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Latest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Rsbn1l:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50223	Chr5:21156767-21156822 (-)	4,601 bp
Tssr50222	Chr5:21150532-21150544 (-)	10,858 bp
Tssr50221	Chr5:21150480-21150528 (-)	10,892 bp
Tssr50220	Chr5:21150428-21150443 (-)	10,960 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/16/2024 MGI 6.23