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Hdac4
Gene Detail
 Symbol
Name
ID
Hdac4
histone deacetylase 4
MGI:3036234
Synonyms 4932408F19Rik
Feature Type protein coding gene
Genetic Map
Chromosome 1
46.24 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr1:91932734-92148393 bp, - strand
From NCBI annotation of GRCm38

  215660 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:55946  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: histone deacetylase class II, eukaryotic type

Human
homologs
Human Homolog HDAC4, histone deacetylase 4
NCBI Gene ID 9759
neXtProt AC  NX_P56524
Human Synonyms  AHO3, BDMR, HA6116, HD4, HDAC-4, HDACA, HDAC-A
Human Chr (Location)  2q37.3; chr2:239048168-239401020 (-)  GRCh38
Alleles
and
phenotypes
All alleles(111) : Targeted(3) Gene trapped(108)
 
Mice homozygous for a gene trap allele exhibit increased thermal nociception threshold and seizures. Mice homozygous for a knock-out allele exhibit postnatal lethality, exencephaly, and abnormal skeleton morphology and physiology.
 
Gene Ontology
(GO)
classifications
All GO classifications: (95 annotations)
Process chromatin modification, chromatin remodeling, ...
Component A band, actomyosin, ...
Function activating transcription factor binding, core promoter binding, ...
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (12 records)
Data Summary: Results (99)    Tissues (16)    Images (21)
Theiler Stages: 2, 3, 23, 25
Assay TypeResults
RNA in situ 63
RT-PCR 36
cDNA source data(10)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(11) cDNA(10) Primer pair(1)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000073617 (Evidence), ENSMUSG00000026313 (Evidence)
Entrez Gene208727 (Evidence)
DFCITC1579334, TC1609771, TC1611020, TC1638018
NIA Mouse Gene IndexU021595
EC3.5.1.98
Consensus CDS ProjectCCDS48324.1
International Mouse Knockout Project StatusHdac4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 208727 NCBI Gene Model | MGI Sequence Detail 215660 C57BL/6J ±  kb
transcript NM_207225 RefSeq | MGI Sequence Detail 3960 C57BL/6 
polypeptide Q6NZM9 UniProt | EBI | MGI Sequence Detail 1076 Not Applicable 

For the selected sequences
All sequences(60) RefSeq(32) UniProt(3)
Polymorphisms SNPs within 2kb(1310 from dbSNP Build 137)    SNPs within 2kb including multiple locations(1314)
Protein-related
information
ResourceIDDescription
InterPro IPR017320 Histone deacetylase class II, eukaryotic
InterPro IPR023801 Histone deacetylase domain
InterPro IPR024643 Histone deacetylase, glutamine rich N-terminal domain
InterPro IPR000286 Histone deacetylase superfamily
Protein Ontology PR:000008483 histone deacetylase 4
Graphical View of Protein Domain Structure
References (Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:205270 Mielcarek M, et al., HDAC4 reduction: a novel therapeutic strategy to target cytoplasmic huntingtin and ameliorate neurodegeneration. PLoS Biol. 2013 Nov;11(11):e1001717
All references(79)
Other
accession IDs
MGI:3034516

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory