About   Help   FAQ
Slc27a6
Gene Detail
 Symbol
Name
ID
Slc27a6
solute carrier family 27 (fatty acid transporter), member 6
MGI:3036230
Synonyms 4732438L20Rik, FATP6
Feature Type protein coding gene
Genetic Map
Chromosome 18
33.71 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr18:58556257-58612773 bp, + strand
From VEGA annotation of GRCm38

  56517 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:38385  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Slc27a6

Human
homologs
Human Homolog SLC27A6, solute carrier family 27 (fatty acid transporter), member 6
NCBI Gene ID 28965
neXtProt AC  NX_Q9Y2P4
Human Synonyms  ACSVL2, FACVL2, FATP6, VLCS-H1
Human Chr (Location)  5q23.3; chr5:128965258-129033642 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Radiation induced(2) Targeted(1)
Genomic Mutations involving Slc27a6 (2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc27a6 interacts with 81 markers (Mir24-1, Mir24-2, Mir28b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process long-chain fatty acid metabolic process
Component endoplasmic reticulum
Function long-chain fatty acid-CoA ligase activity, very long-chain fatty acid-CoA ligase activity
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (7 records)
Data Summary: Results (135)    Tissues (118)    Images (28)
Theiler Stages: 22, 23, 28
Assay TypeResults
RNA in situ 135
cDNA source data(7)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(8) cDNA(7) Primer pair(1)
Microarray probesets(1)
Other database
links
VEGA Gene ModelOTTMUSG00000029853 (Evidence)
Ensembl Gene ModelENSMUSG00000024600 (Evidence)
Entrez Gene225579 (Evidence)
UniGene258517
DFCITC1601273
DoTSDT.55183045
NIA Mouse Gene IndexU018763
Consensus CDS ProjectCCDS37828.1
International Mouse Knockout Project StatusSlc27a6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000029853 VEGA Gene Model | MGI Sequence Detail 56517 C57BL/6J ±  kb
transcript OTTMUST00000074092 VEGA | MGI Sequence Detail 2485 Not Applicable 
polypeptide OTTMUSP00000038443 VEGA | MGI Sequence Detail 619 Not Applicable 

For the selected sequences
All sequences(16) RefSeq(2) UniProt(2)
Polymorphisms SNPs within 2kb(400 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR020845 AMP-binding, conserved site
InterPro IPR000873 AMP-dependent synthetase/ligase
InterPro IPR025110 Domain of unknown function DUF4009
Protein Ontology PR:000015050 long-chain fatty acid transport protein 6
References (Earliest) J:93142 Jia Z, et al., X-linked adrenoleukodystrophy: role of very long-chain acyl-CoA synthetases. Mol Genet Metab. 2004 Sep;83(1-2):117-27
(Latest) J:188341 Chen WV, et al., Functional significance of isoform diversification in the protocadherin gamma gene cluster. Neuron. 2012 Aug 9;75(3):402-9
All references(27)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
08/12/2014
MGI 5.19
The Jackson Laboratory