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Slc27a6
Gene Detail
Symbol

Name
ID
Slc27a6
solute carrier family 27 (fatty acid transporter), member 6
MGI:3036230
Synonyms
4732438L20Rik, FATP6
Feature Type
protein coding gene
Genetic Map
Chromosome 18
33.71 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr18:58556257-58612773 bp, + strand
From VEGA annotation of GRCm38

  56517 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:38385  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLC27A6
Gene Tree: Slc27a6

Human
homologs
SLC27A6, solute carrier family 27 (fatty acid transporter), member 6
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 28965
neXtProt AC: NX_Q9Y2P4

Human Synonyms: ACSVL2, FACVL2, FATP6, VLCS-H1

Human Chr (Location): 5q23.3; chr5:128965475-129033642 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Radiation induced(2) Targeted(1)
Genomic Mutations involving Slc27a6 (2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Slc27a6 interacts with 81 markers (Mir24-1, Mir24-2, Mir28b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (8 records)
Data Summary: Results (135)    Tissues (118)    Images (28)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 135
cDNA source data(7)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase slc27a6    NEW 
Molecular
reagents
All nucleic(8) cDNA(7) Primer pair(1)
Microarray probesets(1)
Other database
links
VEGA Gene Model OTTMUSG00000029853 (Evidence)
Ensembl Gene Model ENSMUSG00000024600 (Evidence)
Entrez Gene 225579 (Evidence)
UniGene 258517
DFCI TC1601273
DoTS DT.55183045
NIA Mouse Gene Index U018763
Consensus CDS Project CCDS37828.1
International Mouse Phenotyping Consortium Status Slc27a6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000029853 VEGA Gene Model | MGI Sequence Detail 56517 C57BL/6J ±  kb
transcript OTTMUST00000074092 VEGA | MGI Sequence Detail 2485 Not Applicable 
polypeptide OTTMUSP00000038443 VEGA | MGI Sequence Detail 619 Not Applicable 

For the selected sequences
All sequences(16) RefSeq(2) UniProt(2)
Polymorphisms
SNPs within 2kb(400 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR020845 AMP-binding, conserved site
InterPro IPR000873 AMP-dependent synthetase/ligase
InterPro IPR025110 Domain of unknown function DUF4009
Protein Ontology PR:000015050 long-chain fatty acid transport protein 6
References
(Earliest) J:93142 Jia Z, et al., X-linked adrenoleukodystrophy: role of very long-chain acyl-CoA synthetases. Mol Genet Metab. 2004 Sep;83(1-2):117-27
(Latest) J:203031 Rainger J, et al., A Trans-Acting protein effect causes severe eye malformation in the Mp mouse. PLoS Genet. 2013;9(12):e1003998
All references(27)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory