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Slc44a5 Gene Detail
Summary
  • Symbol
    Slc44a5
  • Name
    solute carrier family 44, member 5
  • Synonyms
    LOC242259
  • Feature Type
    protein coding gene
  • IDs
    MGI:3035141
    NCBI Gene: 242259
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:153679073-153977359 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 78.82 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    975 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3035141
 protein coding gene Chr3:153679056-153977384 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028001
 protein coding gene Chr3:157949537-158282572 (+)
A/J MGP_AJ_G0027960
 protein coding gene Chr3:152190635-152497494 (+)
AKR/J MGP_AKRJ_G0027926
 protein coding gene Chr3:156269250-156582677 (+)
BALB/cJ MGP_BALBcJ_G0027972
 protein coding gene Chr3:152008037-152308731 (+)
C3H/HeJ MGP_C3HHeJ_G0027702
 protein coding gene Chr3:156638633-156950111 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028415
 protein coding gene Chr3:163094110-163444992 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025753
 protein coding gene Chr3:146966462-147263973 (+)
CAST/EiJ MGP_CASTEiJ_G0027155
 protein coding gene Chr3:156747602-157077283 (+)
CBA/J MGP_CBAJ_G0027677
 protein coding gene Chr3:168973091-169331225 (+)
DBA/2J MGP_DBA2J_G0027817
 protein coding gene Chr3:151272289-151571086 (+)
FVB/NJ MGP_FVBNJ_G0027784
 protein coding gene Chr3:148651746-148948392 (+)
LP/J MGP_LPJ_G0027928
 protein coding gene Chr3:159275912-159595315 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027817
 protein coding gene Chr3:177436686-177770196 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028474
 protein coding gene Chr3:155919336-156220910 (+)
PWK/PhJ MGP_PWKPhJ_G0026878
 protein coding gene Chr3:151193683-151494518 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026706
 protein coding gene Chr3:154061809-154382401 (+)
WSB/EiJ MGP_WSBEiJ_G0027235
 protein coding gene Chr3:156897483-157199682 (+)



Homology
more
  • Human Ortholog
    SLC44A5, solute carrier family 44 member 5
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC44A5, solute carrier family 44 member 5
  • Synonyms
    CTL5
  • Links
    NCBI Gene ID: 204962
    neXtProt AC: NX_Q8NCS7
    UniProt: Q8NCS7

  • Chr Location
    1p31.1; chr1:75202129-75724015 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    13
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    815
  • Tissues
    23
  • cDNA Data
    18
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028360 Ensembl Gene Model | MGI Sequence Detail 298287 C57BL/6J ±  kb
transcript ENSMUST00000239250 Ensembl | MGI Sequence Detail 3853 Not Applicable  
polypeptide ENSMUSP00000159268 Ensembl | MGI Sequence Detail 721 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    cDNA 18
    Primer pair 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:2685268
References
more
  • Summaries
    All 30
    Developmental Gene Expression 2
    Gene Ontology 6
    Phenotypes 5
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:322321 Catela C, et al., Control of spinal motor neuron terminal differentiation through sustained Hoxc8 gene activity. Elife. 2022 Mar 22;11:e70766
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory