BB557941 Gene Detail

Summary

• Symbol
  BB557941
• Name
  expressed sequence BB557941

• Feature Type
  lncRNA gene
• IDs
  MGI:3034820
  NCBI Gene: 767815
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:57017489-57071766 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 31.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  250 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3034820	lncRNA gene	Chr2:57017489-57071783 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015419	unclassified non-coding RNA gene	Chr2:56617318-56677784 (-)
A/J	MGP_AJ_G0015394	unclassified non-coding RNA gene	Chr2:54465044-54513049 (-)
AKR/J	MGP_AKRJ_G0015358	unclassified non-coding RNA gene	Chr2:55960157-56011659 (-)
BALB/cJ	MGP_BALBcJ_G0015358	unclassified non-coding RNA gene	Chr2:54565781-54616762 (-)
C3H/HeJ	MGP_C3HHeJ_G0015182	unclassified non-coding RNA gene	Chr2:56018635-56071129 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015812	unclassified non-coding RNA gene	Chr2:58372141-58427156 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013552	unclassified non-coding RNA gene	Chr2:52091985-52139450 (-)
CAST/EiJ	MGP_CASTEiJ_G0014733	unclassified non-coding RNA gene	Chr2:56040649-56099337 (-)
CBA/J	MGP_CBAJ_G0015161	unclassified non-coding RNA gene	Chr2:60493891-60551065 (-)
DBA/2J	MGP_DBA2J_G0015256	unclassified non-coding RNA gene	Chr2:54077704-54125565 (-)
FVB/NJ	MGP_FVBNJ_G0015263	unclassified non-coding RNA gene	Chr2:53631880-53679365 (-)
LP/J	MGP_LPJ_G0015336	unclassified non-coding RNA gene	Chr2:56497635-56552111 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015289	unclassified non-coding RNA gene	Chr2:62196260-62261483 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015851	unclassified non-coding RNA gene	Chr2:55940098-55991831 (-)
PWK/PhJ	MGP_PWKPhJ_G0014521	unclassified non-coding RNA gene	Chr2:53887471-53938562 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014309	unclassified non-coding RNA gene	Chr2:56060535-56110745 (-)
WSB/EiJ	MGP_WSBEiJ_G0014840	unclassified non-coding RNA gene	Chr2:56247288-56299238 (-)

Homology

• Gene Tree
  BB557941
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving BB557941
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000084938 (Evidence)
• NCBI Gene
  767815

Representative Sequences			Length	Strain/Species
genomic	767815	NCBI Gene Model | MGI Sequence Detail	54278	C57BL/6J
transcript	NR_040356	RefSeq | MGI Sequence Detail	1099	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 4
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for BB557941:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr24122	Chr2:57071760-57071774 (-)	-1 bp