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AA386476 Gene Detail
Summary
  • Symbol
    AA386476
  • Name
    expressed sequence AA386476
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3034595
    NCBI Gene: 546058
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:47675359-47677071 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 26.87 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3034595
lncRNA gene Chr8:47675359-47685239 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033599
protein coding gene Chr8:46858218-46859880 (+)
A/J MGP_AJ_G0033581
protein coding gene Chr8:45025037-45026700 (+)
AKR/J MGP_AKRJ_G0033506
protein coding gene Chr8:46331820-46333481 (+)
BALB/cJ MGP_BALBcJ_G0033578
protein coding gene Chr8:45205753-45207418 (+)
C3H/HeJ MGP_C3HHeJ_G0033287
protein coding gene Chr8:46899889-46901550 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034094
protein coding gene Chr8:48615554-48617215 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031043
protein coding gene Chr8:41255456-41257168 (+)
CAST/EiJ MGP_CASTEiJ_G0032613
protein coding gene Chr8:46347095-46349781 (+)
CBA/J MGP_CBAJ_G0033266
protein coding gene Chr8:50552660-50554322 (+)
DBA/2J MGP_DBA2J_G0033419
protein coding gene Chr8:44827502-44829163 (+)
FVB/NJ MGP_FVBNJ_G0033360
protein coding gene Chr8:44301553-44303214 (+)
LP/J MGP_LPJ_G0033507
protein coding gene Chr8:46852179-46853841 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033405
protein coding gene Chr8:50590702-50592367 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034112
protein coding gene Chr8:46518706-46520368 (+)
PWK/PhJ MGP_PWKPhJ_G0032321
protein coding gene Chr8:44349402-44351081 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032157
protein coding gene Chr8:45682879-45684610 (+)
WSB/EiJ MGP_WSBEiJ_G0032729
protein coding gene Chr8:46777047-46778709 (+)



Homology
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Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
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Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic 546058 NCBI Gene Model | MGI Sequence Detail 1713 C57BL/6J ±  kb
transcript NR_166692 RefSeq | MGI Sequence Detail 8049 C57BL/6  
polypeptide Q8BND0 UniProt | EBI | MGI Sequence Detail 109 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 3
References
more
  • Summaries
    All 18
    Phenotypes 4
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
07/29/2020
MGI 6.15
The Jackson Laboratory