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Or5d42-ps1 Pseudogene Detail
Summary
  • Symbol
    Or5d42-ps1
  • Name
    olfactory receptor family 5 subfamily D member 42, pseudogene 1
  • Synonyms
    GA_x6K02T2Q125-49738648-49737686, MOR174-17P, Olfr1171-ps1
  • Feature Type
    pseudogene
  • IDs
    MGI:3031005
    NCBI Gene: 257896
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr2:88083303-88084139 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 49.98 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    29 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3031005
 pseudogene Chr2:88083303-88084145 (-)
129S1/SvImJ MGP_129S1SvImJ_G0039813
 pseudogene Chr2:89319064-89319905 (-)
A/J MGP_AJ_G0039812
 pseudogene Chr2:85815026-85815867 (-)
AKR/J MGP_AKRJ_G0039739
 pseudogene Chr2:88233491-88235404 (-)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0039486
 pseudogene ChrX:60204708-60206553 (-)
C57BL/6NJ MGP_C57BL6NJ_G0040352
 pseudogene Chr2:92336075-92336916 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0036962
 pseudogene Chr2:82322644-82323758 (-)
CAST/EiJ MGP_CASTEiJ_G0038553
 pseudogene Chr2:88700744-88835661 (-)
CBA/J MGP_CBAJ_G0039411
 pseudogene Chr2:95446794-95451483 (-)
DBA/2J no annotation
FVB/NJ no annotation
LP/J MGP_LPJ_G0039647
 pseudogene Chr2:89254151-89453067 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0039570
 pseudogene Chr2:98354855-98356397 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0040455
 pseudogene Chr2:88276959-88277800 (-)
PWK/PhJ MGP_PWKPhJ_G0038233
 pseudogene Chr2:85238396-85239289 (+)
SPRET/EiJ MGP_SPRETEiJ_G0037976
 pseudogene Chr2:88059638-88060752 (-)
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    4 involving Or5d42-ps1
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    20
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000082010 Ensembl Gene Model | MGI Sequence Detail 837 C57BL/6J ±  kb
transcript ENSMUST00000118079 Ensembl | MGI Sequence Detail 837 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 13
    Phenotypes 6
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory