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Olfr1038-ps Pseudogene Detail
Summary
  • Symbol
    Olfr1038-ps
  • Name
    olfactory receptor 1038, pseudogene
  • Synonyms
    GA_x6K02T2Q125-47591072-47592031, MOR185-3
  • Feature Type
    polymorphic pseudogene
  • IDs
    MGI:3030872
    NCBI Gene: 259015
  • Gene Overview
    MyGene.info: OR5R1
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr2:86120224-86123037 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 49.73 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    41 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3030872
polymorphic pseudogene Chr2:86120223-86126356 (.)
129S1/SvImJ MGP_129S1SvImJ_G0040239
pseudogene Chr2:86949894-86950848 (+)
A/J MGP_AJ_G0040221
pseudogene Chr2:83516658-83517614 (+)
AKR/J MGP_AKRJ_G0040155
pseudogene Chr2:85719160-85720116 (+)
BALB/cJ MGP_BALBcJ_G0040222
pseudogene Chr2:83695773-83696729 (+)
C3H/HeJ MGP_C3HHeJ_G0039861
pseudogene Chr2:85973106-85974062 (+)
C57BL/6NJ MGP_C57BL6NJ_G0040811
pseudogene Chr2:89702954-89703908 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0037249
pseudogene Chr2:80255176-80256132 (+)
CAST/EiJ MGP_CASTEiJ_G0038948
pseudogene Chr2:86546209-86547165 (+)
CBA/J MGP_CBAJ_G0039829
pseudogene Chr2:92800652-92801608 (+)
DBA/2J MGP_DBA2J_G0040022
pseudogene Chr2:83052171-83053127 (+)
FVB/NJ MGP_FVBNJ_G0039980
pseudogene Chr2:82244301-82245257 (+)
LP/J MGP_LPJ_G0040069
pseudogene Chr2:86905157-86906113 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0039976
pseudogene Chr2:95227866-95228822 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0040911
pseudogene Chr2:85974007-85974963 (+)
PWK/PhJ MGP_PWKPhJ_G0038639
pseudogene Chr2:82954067-82955023 (+)
SPRET/EiJ MGP_SPRETEiJ_G0038335
pseudogene Chr2:86020455-86021411 (+)
WSB/EiJ MGP_WSBEiJ_G0039166
pseudogene Chr2:86605772-86606728 (+)



Homology
more
  • Human Ortholog
    OR5R1, olfactory receptor family 5 subfamily R member 1 (gene/pseudogene)
  • Vertebrate Orthologs
    7
  • Human Ortholog
    OR5R1, olfactory receptor family 5 subfamily R member 1 (gene/pseudogene)
    Orthology source: HomoloGene, HGNC
  • Synonyms
    OR11-185, OR5R1P
  • Links
    NCBI Gene ID: 219479
    neXtProt AC: NX_Q8NH85
    UniProt: Q8NH85

  • Chr Location
    11q12.1; chr11:56417258-56418232 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic 259015 NCBI Gene Model | MGI Sequence Detail 2814 C57BL/6J ±  kb
transcript NM_147013 RefSeq | MGI Sequence Detail 1212 Not Specified  
polypeptide Q8VGS1 UniProt | EBI | MGI Sequence Detail 319 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    cDNA 3
    Other 1

    Microarray probesets 1
References
more
  • Summaries
    All 17
    Developmental Gene Expression 2
    Phenotypes 4
  • Earliest
    J:74521 Zhang X, et al., The olfactory receptor gene superfamily of the mouse. Nat Neurosci. 2002 Feb;5(2):124-33
  • Latest
    J:227263 Fabre PJ, et al., Nanoscale spatial organization of the HoxD gene cluster in distinct transcriptional states. Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):13964-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory