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Olfr680-ps1 Pseudogene Detail
Summary
  • Symbol
    Olfr680-ps1
  • Name
    olfactory receptor 680, pseudogene 1
  • Synonyms
    GA_x6K02T2PBJ9-7720330-7719479, MOR40-10P
Location &
Maps
more
  • Sequence Map
    Chr7:105090702-105091394 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 55.75 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    15 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3030514
pseudogene Chr7:105090702-105092817 (-)
129S1/SvImJ MGP_129S1SvImJ_G0040650
pseudogene Chr7:108295728-108298896 (-)
A/J MGP_AJ_G0040649
pseudogene Chr7:105455853-105457810 (-)
AKR/J MGP_AKRJ_G0040580
pseudogene Chr7:108253887-108255996 (-)
BALB/cJ MGP_BALBcJ_G0040640
pseudogene Chr7:105218104-105222572 (-)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0041335
pseudogene Chr7:112613052-112615216 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0037481
pseudogene Chr7:107573500-107575554 (-)
CAST/EiJ MGP_CASTEiJ_G0039322
pseudogene Chr7:100166554-100187401 (-)
CBA/J MGP_CBAJ_G0040245
pseudogene Chr7:116382309-116384428 (-)
DBA/2J MGP_DBA2J_G0040458
pseudogene Chr7:103760643-103762818 (-)
FVB/NJ MGP_FVBNJ_G0040385
pseudogene Chr7:103545002-103610746 (-)
LP/J MGP_LPJ_G0040495
pseudogene Chr7:109710245-109715027 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0040375
pseudogene Chr7:117953075-117958769 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0041388
pseudogene Chr7:107278468-107305051 (-)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0038689
pseudogene Chr7:94421327-94424110 (-)
WSB/EiJ MGP_WSBEiJ_G0039574
pseudogene Chr7:107983935-107986005 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 257981 NCBI Gene Model | MGI Sequence Detail 693 C57BL/6J ±  kb
polypeptide A0A2I3BS13 UniProt | EBI | MGI Sequence Detail 311 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR017452 GPCR, rhodopsin-like, 7TM
    IPR000276 G protein-coupled receptor, rhodopsin-like
    IPR000725 Olfactory receptor
References
more
  • Summaries
    All 17
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/26/2020
MGI 6.15
The Jackson Laboratory