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Olfr556 Gene Detail
Summary
  • Symbol
    Olfr556
  • Name
    olfactory receptor 556
  • Synonyms
    GA_x6K02T2PBJ9-5386601-5387575, MOR41-1
  • Feature Type
    protein coding gene
  • IDs
    MGI:3030390
    NCBI Gene: 258749
  • Gene Overview
    MyGene.info: OR52I2
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr7:102669901-102670923 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 54.80 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    51 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3030390
protein coding gene Chr7:102664899-102673270 (.)
129S1/SvImJ MGP_129S1SvImJ_G0032621
protein coding gene Chr7:105734193-105735215 (+)
A/J MGP_AJ_G0032597
protein coding gene Chr7:103029624-103030646 (+)
AKR/J MGP_AKRJ_G0032533
protein coding gene Chr7:105505479-105506501 (+)
BALB/cJ MGP_BALBcJ_G0032608
protein coding gene Chr7:102732286-102733308 (+)
C3H/HeJ MGP_C3HHeJ_G0032322
protein coding gene Chr7:105896960-105897982 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033105
protein coding gene Chr7:109694251-109695273 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030099
protein coding gene Chr7:105366157-105367179 (+)
CAST/EiJ MGP_CASTEiJ_G0031648
protein coding gene Chr7:97445287-97446309 (+)
CBA/J MGP_CBAJ_G0032288
protein coding gene Chr7:113558701-113559723 (+)
DBA/2J MGP_DBA2J_G0032440
protein coding gene Chr7:101363502-101364524 (+)
FVB/NJ MGP_FVBNJ_G0032396
protein coding gene Chr7:101119984-101121006 (+)
LP/J MGP_LPJ_G0032529
protein coding gene Chr7:107049522-107050544 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032430
protein coding gene Chr7:114825849-114826871 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033127
protein coding gene Chr7:104774802-104775824 (+)
PWK/PhJ MGP_PWKPhJ_G0031366
protein coding gene Chr7:94460979-94462001 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031208
protein coding gene Chr7:92074567-92075589 (+)
WSB/EiJ MGP_WSBEiJ_G0031765
protein coding gene Chr7:105448325-105449347 (+)



Homology
more
  • Human Ortholog
    OR52I2, olfactory receptor family 52 subfamily I member 2
  • Vertebrate Orthologs
    9
  • Human Ortholog
    OR52I2, olfactory receptor family 52 subfamily I member 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    OR11-12, OR52I1
  • Links
    NCBI Gene ID: 143502
    neXtProt AC: NX_Q8NH67
    UniProt: Q8NH67

  • Chr Location
    11p15.4; chr11:4586791-4587905 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 258749 NCBI Gene Model | MGI Sequence Detail 1023 C57BL/6J ±  kb
transcript NM_146754 RefSeq | MGI Sequence Detail 1023 C57BL/6  
polypeptide NP_666965 RefSeq | MGI Sequence Detail 324 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR017452 GPCR, rhodopsin-like, 7TM
    IPR000276 G protein-coupled receptor, rhodopsin-like
    IPR000725 Olfactory receptor
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 1
References
more
  • Summaries
    All 25
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory