Zfp422-ps Pseudogene Detail

Summary

• Symbol
  Zfp422-ps
• Name
  zinc finger protein 422, pseudogene
• Synonyms
  Krox-25-2, Zfp422-rs1

• Feature Type
  pseudogene
• IDs
  MGI:3028594
  NCBI Gene: 100416808
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:33524013-33524719 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 17.98 cM, cytoband B2
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  9
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3028594	pseudogene	Chr17:33522623-33524837 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040146	pseudogene	Chr17:33221536-33222350 (-)
A/J	MGP_AJ_G0040451	pseudogene	Chr6:114742387-114743094 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0040125	pseudogene	Chr17:32201500-32224266 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040716	pseudogene	Chr17:34426079-34426898 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0040250	pseudogene	Chr6:113656629-113659142 (-)
FVB/NJ	MGP_FVBNJ_G0039896	pseudogene	Chr17:31311073-31311884 (-)
LP/J	MGP_LPJ_G0040292	pseudogene	Chr6:119341894-119343726 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040191	pseudogene	Chr6:131346158-131346870 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Zfp422-ps
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000091515 (Evidence)
• NCBI Gene
  100416808

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091515	Ensembl Gene Model | MGI Sequence Detail	707	C57BL/6J
transcript	ENSMUST00000182230	Ensembl | MGI Sequence Detail	707	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 7
• Earliest
  J:87787 Lee SK, et al., Molecular cloning, chromosomal mapping, and characteristic expression in tooth organ of rat and mouse Krox-25. Genomics. 2004 Feb;83(2):243-53
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Zfp422-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147435	Chr17:33524820-33524837 (-)	-110 bp