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Rsph4a
Gene Detail
Symbol

Name
ID
Rsph4a
radial spoke head 4 homolog A (Chlamydomonas)
MGI:3027894
Synonyms
Rshl3
Feature Type
protein coding gene
Genetic Map
Chromosome 10
18.84 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr10:33905485-33915883 bp, + strand
From VEGA annotation of GRCm38

  10399 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:71779  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Rsph4a

Human
homologs
Human Homolog RSPH4A, radial spoke head 4 homolog A (Chlamydomonas)
NCBI Gene ID 345895
neXtProt AC  NX_Q5TD94
Human Synonyms  CILD11, dJ412I7.1, RSHL3, RSPH6B
Human Chr (Location)  6q22.1; chr6:116616411-116632985 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human RSPH4A
Mutations,
alleles, and
phenotypes
Incidental mutations (data from Mutagenetix , APF )
Interactions
Rsph4a interacts with 256 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process axoneme assembly, cilium movement
Component cell projection, cilium, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (26)    Tissues (2)    Images (15)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 26
cDNA source data(6)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(6) cDNA(6)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000029742 (Evidence)
Ensembl Gene ModelENSMUSG00000039552 (Evidence)
Entrez Gene212892 (Evidence)
UniGene131949
DFCITC1599516
DoTSDT.101293913
NIA Mouse Gene IndexU011392
Consensus CDS ProjectCCDS48534.1
International Mouse Knockout Project StatusRsph4a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000029742 VEGA Gene Model | MGI Sequence Detail 10399 C57BL/6J ±  kb
transcript OTTMUST00000073807 VEGA | MGI Sequence Detail 3138 Not Applicable 
polypeptide OTTMUSP00000038252 VEGA | MGI Sequence Detail 512 Not Applicable 

For the selected sequences
All sequences(22) RefSeq(3) UniProt(2)
Polymorphisms
SNPs within 2kb(78 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006802 Radial spokehead-like protein
Protein Ontology PR:000014328 radial spoke head protein 4 homolog A
References
(Earliest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(24)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory