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Rsph4a
Gene Detail
Symbol

Name
ID
Rsph4a
radial spoke head 4 homolog A (Chlamydomonas)
MGI:3027894
Synonyms
Rshl3
Feature Type
protein coding gene
Genetic Map
Chromosome 10
18.84 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr10:33905485-33915883 bp, + strand
From VEGA annotation of GRCm38

  10399 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:71779  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: RSPH4A
Gene Tree: Rsph4a

Human
homologs
RSPH4A, radial spoke head 4 homolog A (Chlamydomonas)
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 345895
neXtProt AC: NX_Q5TD94

Human Synonyms: CILD11, dJ412I7.1, RSHL3, RSPH6B

Human Chr (Location): 6q22.1; chr6:116593900-116633051 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human RSPH4A

Mutations,
alleles, and
phenotypes
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Rsph4a interacts with 256 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process axoneme assembly, cilium movement
Component axoneme, cell projection, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (26)    Tissues (2)    Images (15)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 26
cDNA source data(6)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(6) cDNA(6)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000029742 (Evidence)
Ensembl Gene Model ENSMUSG00000039552 (Evidence)
Entrez Gene 212892 (Evidence)
UniGene 131949
DFCI TC1599516
DoTS DT.101293913
NIA Mouse Gene Index U011392
Consensus CDS Project CCDS48534.1
International Mouse Phenotyping Consortium Status Rsph4a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000029742 VEGA Gene Model | MGI Sequence Detail 10399 C57BL/6J ±  kb
transcript OTTMUST00000073807 VEGA | MGI Sequence Detail 3138 Not Applicable 
polypeptide OTTMUSP00000038252 VEGA | MGI Sequence Detail 512 Not Applicable 

For the selected sequences
All sequences(21) RefSeq(2) UniProt(2)
Polymorphisms
SNPs within 2kb(78 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006802 Radial spokehead-like protein
Protein Ontology PR:000014328 radial spoke head protein 4 homolog A
References
(Earliest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(22)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory