Arhgap20os Gene Detail

Summary

• Symbol
  Arhgap20os
• Name
  Rho GTPase activating protein 20, opposite strand
• Synonyms
  9230115E21Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3027124
  NCBI Gene: 408028
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:51750793-51787185 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 28.62 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1005 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3027124	antisense lncRNA gene	Chr9:51744114-51787186 (-)
129S1/SvImJ	ENSMUSG00200018905	lncRNA gene	Chr9:48904604-48947727 (-)
129S1/SvImJ	ENSMUSG00200018028	protein coding gene	Chr9:48911220-48947630 (-)
A/J	ENSMUSG00195023210	protein coding gene	Chr9:48596892-48633312 (-)
A/J	ENSMUSG00195024563	lncRNA gene	Chr9:48590276-48633409 (-)
AKR/J	ENSMUSG00220032494	protein coding gene	Chr9:48694049-48730472 (-)
AKR/J	ENSMUSG00220042354	lncRNA gene	Chr9:48687433-48730539 (-)
BALB/cJ	ENSMUSG00180032780	lncRNA gene	Chr9:48701627-48744762 (-)
BALB/cJ	ENSMUSG00180031254	protein coding gene	Chr9:48708244-48744665 (-)
C3H/HeJ	ENSMUSG00175015260	protein coding gene	Chr9:48720246-48756660 (-)
C3H/HeJ	ENSMUSG00175015916	lncRNA gene	Chr9:48713630-48756757 (-)
C57BL/6NJ	ENSMUSG00215037734	lncRNA gene	Chr9:48671825-48714937 (-)
C57BL/6NJ	ENSMUSG00215015349	protein coding gene	Chr9:48678442-48714870 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004193	antisense lncRNA gene	Chr9:48664366-48702316 (-)
CAST/EiJ	ENSTCUG00005016206	lncRNA gene	Chr9:48636622-48681720 (-)
CBA/J	ENSMUSG00210016983	lncRNA gene	Chr9:48790083-48833192 (-)
DBA/2J	ENSMUSG00185012352	lncRNA gene	Chr9:48828065-48871199 (-)
DBA/2J	ENSMUSG00185010450	protein coding gene	Chr9:48834681-48871102 (-)
FVB/NJ	ENSMUSG00205030010	protein coding gene	Chr9:49055135-49091572 (-)
FVB/NJ	ENSMUSG00205044526	lncRNA gene	Chr9:49048518-49091656 (-)
JF1/MsJ	ENSUMUG00000043207	lncRNA gene	Chr9:48874846-48917689 (-)
LP/J	ENSMUSG00230038724	protein coding gene	Chr9:49122633-49159043 (-)
LP/J	ENSMUSG00230042535	lncRNA gene	Chr9:49116017-49159140 (-)
NOD/ShiLtJ	ENSMUSG00190025818	lncRNA gene	Chr9:48908063-48951221 (-)
NZO/HlLtJ	ENSMUSG00225044412	lncRNA gene	Chr9:49084049-49127050 (-)
PWK/PhJ	ENSLUMG00010022458	lncRNA gene	Chr9:48842714-48885540 (-)
SPRET/EiJ	ENSMSPG00010011829	lncRNA gene	Chr9:49695076-49738232 (-)
WSB/EiJ	ENSIUOG00005021091	lncRNA gene	Chr9:48315168-48358263 (-)

Homology

• Gene Tree
  Arhgap20os
  

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000074354 (Evidence)
• NCBI Gene
  408028

Representative Sequences			Length	Strain/Species
genomic	408028	NCBI Gene Model | MGI Sequence Detail	36393	C57BL/6J
transcript	NR_033560	RefSeq | MGI Sequence Detail	1484	C57BL/6
polypeptide	Q3TNP0	UniProt | EBI | MGI Sequence Detail	86	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 2

References

• Summaries
  All 14
• Earliest
  J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for Arhgap20os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr89550	Chr9:51787179-51787187 (-)	2 bp