Tgm4
Gene Detail

Symbol Name ID

Tgm4 transglutaminase 4 (prostate) MGI:3027002

Synonyms

9530008N10Rik, Eapa1, experimental autoimmune prostatitis antigen 1

Feature Type

protein coding gene

Genetic Map

Chromosome 9

73.56 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr9:123034739-123067561 bp, + strand From VEGA annotation of GRCm38   32823 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:20689  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 chicken

Protein SuperFamily: TGM_EBP42
Gene Tree: Tgm4

Human homologs

Human Homolog		TGM4, transglutaminase 4
NCBI Gene ID		7047
neXtProt AC		NX_P49221
Human Synonyms		hTGP, TGP
Human Chr (Location)		3p22-p21.33; chr3:44916098-44956088 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(1) : Targeted(1)

Gene Ontology (GO) classifications

All GO classifications: (8 annotations)

Process	mating plug formation, peptide cross-linking
Component	extracellular region
Function	metal ion binding, protein-glutamine gamma-glutamyltransferase activity, ...

External Resources: FuncBase

Expression

Literature Summary: (2 records)
Data Summary: Results (103)    Tissues (97)    Images (2)
Theiler Stages: 22, 28

Assay Type	Results
RNA in situ	94
RT-PCR	9

cDNA source data(5)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(6) cDNA(5) Primer pair(1)
Microarray probesets(4)

Other database links

VEGA Gene Model	OTTMUSG00000023752 (Evidence)
Ensembl Gene Model	ENSMUSG00000025787 (Evidence)
Entrez Gene	331046 (Evidence)
DFCI	TC1574477, TC1634605, TC1653311
NIA Mouse Gene Index	U011191
EC	2.3.2.13
Consensus CDS Project	CCDS23653.1
International Mouse Knockout Project Status	Tgm4

Sequences

Length	Strain/Species
genomic	OTTMUSG00000023752	VEGA Gene Model | MGI Sequence Detail	32823	C57BL/6J
transcript	OTTMUST00000058027	VEGA | MGI Sequence Detail	2770	Not Applicable
polypeptide	OTTMUSP00000028062	VEGA | MGI Sequence Detail	670	Not Applicable

All sequences(28) RefSeq(2) UniProt(1)

Polymorphisms

SNPs(107 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR014756	Immunoglobulin E-set
InterPro	IPR013783	Immunoglobulin-like fold
InterPro	IPR023608	Protein-glutamine gamma-glutamyltransferase, eukaryota
InterPro	IPR013808	Transglutaminase, conserved site
InterPro	IPR008958	Transglutaminase, C-terminal
InterPro	IPR002931	Transglutaminase-like
InterPro	IPR001102	Transglutaminase, N-terminal
Protein Ontology	PR:000016295	protein-glutamine gamma-glutamyltransferase 4

References

(Earliest) J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(28)