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Trav13-5 Gene Detail
Summary
  • Symbol
    Trav13-5
  • Name
    T cell receptor alpha variable 13-5
  • Synonyms
    B230359F08Rik
  • Feature Type
    gene segment
  • IDs
    MGI:3026946
    NCBI Gene: 219060
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr14:53795455-53795963 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.52 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    79 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3026946
gene segment Chr14:53795357-53795963 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002565
gene segment Chr14:47698262-47698868 (+)
A/J MGP_AJ_G0002536
gene segment Chr14:46799337-46799943 (+)
AKR/J MGP_AKRJ_G0002527
gene segment Chr14:48490846-48491452 (+)
BALB/cJ MGP_BALBcJ_G0002522
gene segment Chr14:46778090-46778696 (+)
C3H/HeJ MGP_C3HHeJ_G0002489
gene segment Chr14:48172721-48173327 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002663
gene segment Chr14:50153092-50153698 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002233
gene segment Chr14:45243530-45244122 (+)
CAST/EiJ MGP_CASTEiJ_G0002475
gene segment Chr14:44424592-44425599 (+)
CBA/J MGP_CBAJ_G0002488
gene segment Chr14:51606831-51607437 (+)
DBA/2J MGP_DBA2J_G0002492
gene segment Chr14:46533557-46534163 (+)
FVB/NJ MGP_FVBNJ_G0002520
gene segment Chr14:46017853-46018459 (+)
LP/J MGP_LPJ_G0002571
gene segment Chr14:48732451-48733057 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002495
gene segment Chr14:51071178-51071784 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002673
gene segment Chr14:47679946-47681458 (+)
PWK/PhJ MGP_PWKPhJ_G0002434
gene segment Chr14:43079289-43079884 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002386
gene segment Chr14:43656315-43656909 (+)
WSB/EiJ MGP_WSBEiJ_G0002490
gene segment Chr14:47990903-47992121 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic 219060 NCBI Gene Model | MGI Sequence Detail 509 C57BL/6J ±  kb
transcript AK153755 GenBank | EMBL | DDBJ | MGI Sequence Detail 2614 C57BL/6J  
polypeptide A0A0B4J1K3 UniProt | EBI | MGI Sequence Detail 109 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 18
    Phenotypes 2
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/26/2019
MGI 6.14
The Jackson Laboratory