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Trav13-5 Gene Detail
Summary
  • Symbol
    Trav13-5
  • Name
    T cell receptor alpha variable 13-5
  • Synonyms
    B230359F08Rik
  • Feature Type
    gene segment
  • IDs
    MGI:3026946
    NCBI Gene: 219060
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr14:53795455-53795963 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.52 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    79 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3026946
gene segment Chr14:53795357-53795963 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002565
gene segment Chr14:47698262-47698868 (+)
A/J MGP_AJ_G0002536
gene segment Chr14:46799337-46799943 (+)
AKR/J MGP_AKRJ_G0002527
gene segment Chr14:48490846-48491452 (+)
BALB/cJ MGP_BALBcJ_G0002522
gene segment Chr14:46778090-46778696 (+)
C3H/HeJ MGP_C3HHeJ_G0002489
gene segment Chr14:48172721-48173327 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002663
gene segment Chr14:50153092-50153698 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002233
gene segment Chr14:45243530-45244122 (+)
CAST/EiJ MGP_CASTEiJ_G0002475
gene segment Chr14:44424592-44425599 (+)
CBA/J MGP_CBAJ_G0002488
gene segment Chr14:51606831-51607437 (+)
DBA/2J MGP_DBA2J_G0002492
gene segment Chr14:46533557-46534163 (+)
FVB/NJ MGP_FVBNJ_G0002520
gene segment Chr14:46017853-46018459 (+)
LP/J MGP_LPJ_G0002571
gene segment Chr14:48732451-48733057 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002495
gene segment Chr14:51071178-51071784 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002673
gene segment Chr14:47679946-47681458 (+)
PWK/PhJ MGP_PWKPhJ_G0002434
gene segment Chr14:43079289-43079884 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002386
gene segment Chr14:43656315-43656909 (+)
WSB/EiJ MGP_WSBEiJ_G0002490
gene segment Chr14:47990903-47992121 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic 219060 NCBI Gene Model | MGI Sequence Detail 509 C57BL/6J ±  kb
transcript AK153755 GenBank | EMBL | DDBJ | MGI Sequence Detail 2614 C57BL/6J  
polypeptide A0A0B4J1K3 UniProt | EBI | MGI Sequence Detail 109 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 18
    Phenotypes 2
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/13/2020
MGI 6.16
The Jackson Laboratory