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BC052040
Gene Detail
 Symbol
Name
ID
BC052040
cDNA sequence BC052040
MGI:3026886
Synonyms MGC:62402
Feature Type protein coding gene
Genetic Map
Chromosome 2
58.18 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr2:115581733-115778768 bp, + strand
From VEGA annotation of GRCm38

  197036 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:32780  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: BC052040

Human
homologs
Human Homolog C15orf41, chromosome 15 open reading frame 41
NCBI Gene ID 84529
neXtProt AC  NX_Q9Y2V0
Human Synonyms  HH114
Human Chr (Location)  15q14; chr15:36579611-36810248 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human C15orf41
Mutations,
alleles, and
phenotypes
All mutations/alleles(26) : Gene trapped(24) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
BC052040 interacts with 263 markers (Mir1a-1, Mir1a-2, Mir10b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (81)    Tissues (11)    Images (20)
Theiler Stages: 23
Assay TypeResults
RNA in situ 81
cDNA source data(11)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(11) cDNA(11)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000015218 (Evidence)
Ensembl Gene ModelENSMUSG00000040282 (Evidence)
Entrez Gene399568 (Evidence)
UniGene134929
DFCITC1582857
DoTSDT.101375425, DT.55189093, DT.94220564, DT.99855528
NIA Mouse Gene IndexU002264
Consensus CDS ProjectCCDS50662.1, CCDS50663.1
International Mouse Knockout Project StatusBC052040
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015218 VEGA Gene Model | MGI Sequence Detail 197036 C57BL/6J ±  kb
transcript OTTMUST00000036061 VEGA | MGI Sequence Detail 2735 Not Applicable 
polypeptide OTTMUSP00000016198 VEGA | MGI Sequence Detail 281 Not Applicable 

For the selected sequences
All sequences(43) RefSeq(16) UniProt(2)
Polymorphisms SNPs within 2kb(912 from dbSNP Build 137)
References (Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(31)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory