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BC052040 Gene Detail
Summary
  • Symbol
    BC052040
  • Name
    cDNA sequence BC052040
  • Synonyms
    MGC:62402
  • Feature Type
    protein coding gene
  • IDs
    MGI:3026886
    NCBI Gene: 399568
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:115581716-115778768 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 58.18 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    908 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3026886
protein coding gene Chr2:115581618-115778774 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026305
protein coding gene Chr2:118135798-118337667 (+)
A/J MGP_AJ_G0026266
protein coding gene Chr2:113350671-113551438 (+)
AKR/J MGP_AKRJ_G0026245
protein coding gene Chr2:116493612-116700393 (+)
BALB/cJ MGP_BALBcJ_G0026279
protein coding gene Chr2:113588098-113787321 (+)
C3H/HeJ MGP_C3HHeJ_G0026024
protein coding gene Chr2:116929054-117131884 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026726
protein coding gene Chr2:122042124-122248180 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024106
protein coding gene Chr2:108465267-108666849 (+)
CAST/EiJ MGP_CASTEiJ_G0025487
protein coding gene Chr2:117228235-117437922 (+)
CBA/J MGP_CBAJ_G0026001
protein coding gene Chr2:126339272-126552271 (+)
DBA/2J MGP_DBA2J_G0026140
protein coding gene Chr2:112778989-112977946 (+)
FVB/NJ MGP_FVBNJ_G0026102
protein coding gene Chr2:111621921-111820232 (+)
LP/J MGP_LPJ_G0026241
protein coding gene Chr2:118442293-118648130 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026121
protein coding gene Chr2:130772181-130980357 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026781
protein coding gene Chr2:116604377-116807671 (+)
PWK/PhJ MGP_PWKPhJ_G0025223
protein coding gene Chr2:112327453-112526987 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025022
protein coding gene Chr2:115741423-115942641 (+)
WSB/EiJ MGP_WSBEiJ_G0025556
protein coding gene Chr2:117420574-117621151 (+)



Homology
more
  • Human Ortholog
    C15orf41, chromosome 15 open reading frame 41
  • Vertebrate Orthologs
    10
  • Human Ortholog
    C15orf41, chromosome 15 open reading frame 41
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HH114
  • Links
    NCBI Gene ID: 84529
    neXtProt AC: NX_Q9Y2V0
    UniProt: Q9Y2V0

  • Chr Location
    15q14; chr15:36579603-36810260 (+)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human C15orf41 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000040282 Ensembl Gene Model | MGI Sequence Detail 197053 C57BL/6J ±  kb
    transcript ENSMUST00000166472 Ensembl | MGI Sequence Detail 2770 Not Applicable  
    polypeptide ENSMUSP00000126772 Ensembl | MGI Sequence Detail 287 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • InterPro Domains
      IPR029404 Protein of unknown function with TPD sequence-motif
    Molecular
    Reagents
    less
    • All nucleic 12
      cDNA 12

      Microarray probesets 3
    References
    more
    • Summaries
      All 32
      Developmental Gene Expression 1
      Phenotypes 13
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    06/11/2019
    MGI 6.14
    The Jackson Laboratory