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Nr1h5 Gene Detail
Summary
  • Symbol
    Nr1h5
  • Name
    nuclear receptor subfamily 1, group H, member 5
  • Synonyms
    FXRB
  • Feature Type
    protein coding gene
  • IDs
    MGI:3026618
    NCBI Gene: 381463
Location & Maps
more
  • Sequence Map
    Chr3:102939658-102964133 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      24476 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 45.25 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    NR1H5P, nuclear receptor subfamily 1 group H member 5, pseudogene
  • Vertebrate Orthologs
    5
  • Human Ortholog
    NR1H5P, nuclear receptor subfamily 1 group H member 5, pseudogene
    Orthology source: HGNC
  • Synonyms
    Fxrb, NR1H5
  • Links
    NCBI Gene ID: 643609

  • Chr Location
    1p13.2; chr1:114834456-114851544 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    2 involving Nr1h5
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000054722 VEGA Gene Model | MGI Sequence Detail 24476 C57BL/6J ±  kb
transcript OTTMUST00000135622 VEGA | MGI Sequence Detail 2835 Not Applicable  
polypeptide OTTMUSP00000071737 VEGA | MGI Sequence Detail 505 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    150 from dbSNP Build 142
Protein
Information
less
  • UniProt
    11 Sequences
  • InterPro Domains
    IPR023257 Liver X receptor
    IPR001723 Nuclear hormone receptor
    IPR000536 Nuclear hormone receptor, ligand-binding domain
    IPR013088 Zinc finger, NHR/GATA-type
    IPR001628 Zinc finger, nuclear hormone receptor-type
Molecular
Reagents
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  • All nucleic 5
    cDNA 5

    Microarray probesets 1
References
more
  • Summaries
    All 15
    Phenotypes 4
  • Earliest
    J:86357 Otte K, et al., Identification of farnesoid X receptor beta as a novel mammalian nuclear receptor sensing lanosterol. Mol Cell Biol. 2003 Feb;23(3):864-72
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory