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Scn4b
Gene Detail
Symbol

Name
ID
Scn4b
sodium channel, type IV, beta
MGI:2687406
Synonyms
LOC384934
Feature Type
protein coding gene
Genetic Map
Chromosome 9
24.84 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr9:45138437-45154152 bp, + strand
From VEGA annotation of GRCm38

  15716 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:18384  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: SCN4B
Gene Tree: Scn4b

Human
homologs
SCN4B, sodium channel, voltage gated, type IV beta subunit
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 6330
neXtProt AC: NX_Q8IWT1

Human Synonyms: ATFB17, LQT10, Navbeta4

Human Chr (Location): 11q23.3; chr11:118133377-118152915 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human SCN4B

Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Targeted(1)
Incidental mutations (data from CvDC )
Interactions
Scn4b interacts with 327 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
Expression
cDNA source data(9)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase scn4b ; ZFIN scn4ba, scn4bb    NEW 
Molecular
reagents
All nucleic(10) Genomic(1) cDNA(9)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000016701 (Evidence)
Ensembl Gene Model ENSMUSG00000046480 (Evidence)
Entrez Gene 399548 (Evidence)
UniGene 335112
DFCI TC1642030, TC1678525
DoTS DT.487499, DT.101135184
NIA Mouse Gene Index U068726
Consensus CDS Project CCDS23130.1
International Mouse Phenotyping Consortium Status Scn4b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016701 VEGA Gene Model | MGI Sequence Detail 15716 C57BL/6J ±  kb
transcript OTTMUST00000040454 VEGA | MGI Sequence Detail 4940 Not Applicable 
polypeptide OTTMUSP00000018078 VEGA | MGI Sequence Detail 228 Not Applicable 

For the selected sequences
All sequences(24) RefSeq(2) UniProt(2)
Polymorphisms
SNPs within 2kb(98 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007110 Immunoglobulin-like domain
InterPro IPR013783 Immunoglobulin-like fold
InterPro IPR003599 Immunoglobulin subtype
InterPro IPR013106 Immunoglobulin V-set
InterPro IPR000920 Myelin P0 protein
Protein Ontology PR:000014525 sodium channel subunit beta-4
References
(Earliest) J:101977 The Jackson Laboratory, Information obtained from The Jackson Laboratory, Bar Harbor, ME. Unpublished. 2005-15;
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(27)
Other
accession IDs
MGI:2686317

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory