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Cdhr2 Gene Detail
Summary
  • Symbol
    Cdhr2
  • Name
    cadherin-related family member 2
  • Synonyms
    LOC268663, Pcdh24
  • Feature Type
    protein coding gene
  • IDs
    MGI:2687323
    NCBI Gene: 268663
  • Gene Overview
    MyGene.info: CDHR2
Location & Maps
more
  • Sequence Map
    Chr13:54701461-54736662 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser
  • Download
    Sequence
      35202 bp   ±  kb flank

  • Genome Browsers
    VEGA | Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 29.03 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    CDHR2, cadherin related family member 2
  • Vertebrate Orthologs
    11
  • Human Ortholog
    CDHR2, cadherin related family member 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PCDH24, PCLKC
  • Links
    NCBI Gene ID: 54825
    neXtProt AC: NX_Q9BYE9

  • Chr Location
    5q35.2; chr5:176542511-176595768 (+)  GRCh38.p2
  • HomoloGene
    Vertebrate Homology Class 134510
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;2 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: CDHR2
  • Gene Tree
    Cdhr2
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Gene trapped
    2
  • Targeted
    3
  • Genomic Mutations
    2 involving Cdhr2
  • Incidental Mutations
    Mutagenetix , APF , CvDC
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    24
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
    18
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000032682 VEGA Gene Model | MGI Sequence Detail 35202 C57BL/6J ±  kb
transcript OTTMUST00000081331 VEGA | MGI Sequence Detail 4129 Not Applicable  
polypeptide OTTMUSP00000043492 VEGA | MGI Sequence Detail 1308 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    146 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 18
    cDNA 18

    Microarray probesets 2
Other
Accession IDs
less
MGI:2685470
References
more
  • Summaries
    All 22
    Diseases 1
    Gene Ontology 3
    Phenotypes 6
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/27/2016
MGI 6.05 		The Jackson Laboratory