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Lypd4 Gene Detail
Summary
  • Symbol
    Lypd4
  • Name
    Ly6/Plaur domain containing 4
  • Synonyms
    4933400F01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2687054
    NCBI Gene: 232973
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:24864619-24869780 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 13.30 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    5 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2687054
protein coding gene Chr7:24864619-24869941 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031844
protein coding gene Chr7:23275030-23280347 (-)
A/J MGP_AJ_G0031823
protein coding gene Chr7:22701550-22706855 (-)
AKR/J MGP_AKRJ_G0031752
protein coding gene Chr7:23228869-23234184 (-)
BALB/cJ MGP_BALBcJ_G0031831
protein coding gene Chr7:22905393-22912438 (-)
C3H/HeJ MGP_C3HHeJ_G0031549
protein coding gene Chr7:23645344-23650339 (-)
C57BL/6NJ MGP_C57BL6NJ_G0032292
protein coding gene Chr7:24044280-24049703 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0029347
protein coding gene Chr7:24135744-24140897 (-)
CAST/EiJ MGP_CASTEiJ_G0030889
protein coding gene Chr7:17121909-17128740 (-)
CBA/J MGP_CBAJ_G0031514
protein coding gene Chr7:24924080-24929077 (-)
DBA/2J MGP_DBA2J_G0031668
protein coding gene Chr7:22606465-22611657 (-)
FVB/NJ MGP_FVBNJ_G0031621
protein coding gene Chr7:22582230-22587219 (-)
LP/J MGP_LPJ_G0031747
protein coding gene Chr7:23583255-23589871 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031658
protein coding gene Chr7:24666683-24672372 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0032324
protein coding gene Chr7:22932694-22938145 (-)
PWK/PhJ MGP_PWKPhJ_G0030613
protein coding gene Chr7:17534972-17540359 (-)
SPRET/EiJ MGP_SPRETEiJ_G0030444
protein coding gene Chr7:14244056-14249282 (-)
WSB/EiJ MGP_WSBEiJ_G0030993
protein coding gene Chr7:23089622-23095223 (-)



Homology
more
  • Human Ortholog
    LYPD4, LY6/PLAUR domain containing 4
  • Vertebrate Orthologs
    6
  • Human Ortholog
    LYPD4, LY6/PLAUR domain containing 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SMR
  • Links
    NCBI Gene ID: 147719
    neXtProt AC: NX_Q6UWN0
    UniProt: Q6UWN0

  • Chr Location
    19q13.2; chr19:41833686-41844771 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 232973 NCBI Gene Model | MGI Sequence Detail 5162 C57BL/6J ±  kb
transcript NM_182785 RefSeq | MGI Sequence Detail 1095 C57BL/6  
polypeptide Q8BVP6 UniProt | EBI | MGI Sequence Detail 246 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 2
References
more
  • Summaries
    All 22
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:161922 Tang T, et al., A mouse knockout library for secreted and transmembrane proteins. Nat Biotechnol. 2010 Jul;28(7):749-55

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory