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Rdh18-ps Pseudogene Detail
Summary
  • Symbol
    Rdh18-ps
  • Name
    retinol dehydrogenase 18, pseudogene
  • Synonyms
    cis-retinol/3alpha-hydroxysterol short-chain dehydrogenase
  • Feature Type
    pseudogene
  • IDs
    MGI:2687008
    NCBI Gene: 380674
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr10:127824284-127843938 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 75.97 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    96 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2687008
pseudogene Chr10:127824216-127846565 (+)
129S1/SvImJ MGP_129S1SvImJ_G0039790
pseudogene Chr10:131469210-131488831 (+)
A/J MGP_AJ_G0039787
pseudogene Chr10:126204385-126241048 (+)
AKR/J MGP_AKRJ_G0039716
pseudogene Chr10:129931181-129952908 (+)
BALB/cJ MGP_BALBcJ_G0039762
pseudogene Chr10:126605921-126625245 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0040325
pseudogene Chr10:135910587-135940361 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0036946
pseudogene Chr10:120130327-120198185 (+)
CAST/EiJ MGP_CASTEiJ_G0038534
pseudogene Chr10:130749199-130785196 (+)
CBA/J MGP_CBAJ_G0039390
pseudogene Chr10:141432108-141470730 (+)
DBA/2J MGP_DBA2J_G0039588
pseudogene Chr10:125296462-125316551 (+)
FVB/NJ no annotation
LP/J MGP_LPJ_G0039624
pseudogene Chr10:132007148-132110246 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0040430
pseudogene Chr10:130016263-130040091 (+)
PWK/PhJ MGP_PWKPhJ_G0038213
pseudogene Chr10:125467354-125539781 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0038768
pseudogene Chr10:130238836-130265381 (+)



Homology
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Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000054031 Ensembl Gene Model | MGI Sequence Detail 19655 C57BL/6J ±  kb
transcript ENSMUST00000143917 Ensembl | MGI Sequence Detail 953 Not Applicable  
polypeptide V9H0I4 UniProt | EBI | MGI Sequence Detail 167 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR036291 NAD(P)-binding domain superfamily
    IPR002347 Short-chain dehydrogenase/reductase SDR
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 11
    Gene Ontology 1
  • Earliest
    J:190322 Archambaud C, et al., Impact of lactobacilli on orally acquired listeriosis. Proc Natl Acad Sci U S A. 2012 Oct 9;109(41):16684-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/24/2020
MGI 6.15
The Jackson Laboratory