Gm1661 Gene Detail

Summary

• Symbol
  Gm1661
• Name
  predicted gene 1661
• Synonyms
  LOC381543, LOC381544, Ncrna00082

• Feature Type
  protein coding gene
• IDs
  MGI:2686507
  NCBI Gene: 381544
• Alliance
  gene page

Location & Maps

• Sequence Map
  Chr4:117215193-117252125 bp, - strand
• From VEGA annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    36933 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 53.43 cM
• Mapping Data
  1 experiment

Homology

• Human Ortholog
  C1orf228, chromosome 1 open reading frame 228

• Vertebrate Orthologs
  10

• Human Ortholog
  C1orf228, chromosome 1 open reading frame 228
  Orthology source: HomoloGene, HGNC
• Synonyms
  NCRNA00082, p40
• Links
  HGNC:34345

  NCBI Gene ID: 339541

  neXtProt AC: NX_Q6PIY5

  UniProt: Q6PIY5

  
  
• Chr Location
  1p34.1; chr1:44674696-44725591 (+)  GRCh38.p7

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• HomoloGene
  Vertebrate Homology Class 28727
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  
• HCOP
  human homology predictions: C1orf228
• Gene Tree
  Gm1661
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Targeted
  3
• Genomic Mutations
  4 involving Gm1661
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  8 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• cDNA Data
  5

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• Gm1661 interacts with 30 markers (Mir17, Mir20b, Mir103-1, ...) View All

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  10
• UniProt
  2
• CCDS
  CCDS18532.1, CCDS51280.1

• VEGA
  OTTMUSG00000009945 (Evidence)
• Ensembl
  ENSMUSG00000060268 (Evidence)
• NCBI Gene
  381544

Representative Sequences			Length	Strain/Species
genomic	OTTMUSG00000009945	VEGA Gene Model | MGI Sequence Detail	36933	C57BL/6J
transcript	OTTMUST00000023099	VEGA | MGI Sequence Detail	1422	Not Applicable
polypeptide	OTTMUSP00000010539	VEGA | MGI Sequence Detail	343	Not Applicable

Polymorphisms

• SNPs within 2kb
  160 from dbSNP Build 142

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR011989 Armadillo-like helical
  IPR016024 Armadillo-type fold

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2686508

References

• Summaries
  All 23

  Phenotypes 9
• Earliest
  J:23094 Davisson MT, New chromosome aberrations. Mouse News Lett. 1988;80:166
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582