Armh1 Gene Detail

Summary

• Symbol
  Armh1
• Name
  armadillo-like helical domain containing 1
• Synonyms
  Gm1661, LOC381543, LOC381544, Ncrna00082

• Feature Type
  protein coding gene
• IDs
  MGI:2686507
  NCBI Gene: 381544
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr4:117213326-117251973 bp, - strand
• From NCBI annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 53.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2686507	protein coding gene	Chr4:117213326-117252125 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0028648	protein coding gene	Chr4:118176318-118222684 (-)
A/J	MGP_AJ_G0028609	protein coding gene	Chr4:113620577-113658050 (-)
AKR/J	MGP_AKRJ_G0028559	protein coding gene	Chr4:116102286-116143289 (-)
BALB/cJ	MGP_BALBcJ_G0028630	protein coding gene	Chr4:114249148-114288712 (-)
C3H/HeJ	MGP_C3HHeJ_G0028344	protein coding gene	Chr4:117687579-117730954 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0029071	protein coding gene	Chr4:122742471-122784009 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026355	protein coding gene	Chr4:107659681-107701239 (-)
CAST/EiJ	MGP_CASTEiJ_G0027778	protein coding gene	Chr4:114892160-114932610 (-)
CBA/J	MGP_CBAJ_G0028311	protein coding gene	Chr4:126094393-126145552 (-)
DBA/2J	MGP_DBA2J_G0028459	protein coding gene	Chr4:114253076-114292571 (-)
FVB/NJ	MGP_FVBNJ_G0028427	protein coding gene	Chr4:112759310-112799295 (-)
LP/J	MGP_LPJ_G0028561	protein coding gene	Chr4:118360631-118400748 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0028454	protein coding gene	Chr4:131043513-131087971 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0029108	protein coding gene	Chr4:117254372-117296887 (-)
PWK/PhJ	MGP_PWKPhJ_G0027504	protein coding gene	Chr4:111054910-111099634 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0027327	protein coding gene	Chr4:113556831-113614822 (-)
WSB/EiJ	MGP_WSBEiJ_G0027857	protein coding gene	Chr4:117130815-117175945 (-)

Homology

• Human Ortholog
  ARMH1, armadillo like helical domain containing 1

• Vertebrate Orthologs
  10

• Human Ortholog
  ARMH1, armadillo like helical domain containing 1
  Orthology source: HomoloGene, HGNC
• Synonyms
  C1orf228, NCRNA00082, p40
• Links
  HGNC:34345

  NCBI Gene ID: 339541

  neXtProt AC: NX_Q6PIY5

  UniProt: Q6PIY5

  
  
• Chr Location
  1p34.1; chr1:44674696-44725591 (+)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 28727
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  
• HCOP
  human homology predictions: ARMH1
• Gene Tree
  Armh1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Targeted
  3
• Genomic Mutations
  4 involving Armh1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• cDNA Data
  6

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• Armh1 interacts with 30 markers (Mir17, Mir20b, Mir103-1, ...) View All

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  11
• UniProt
  2
• CCDS
  CCDS18532.1, CCDS51280.1

• Ensembl
  ENSMUSG00000060268 (Evidence)
• NCBI Gene
  381544

Representative Sequences			Length	Strain/Species
genomic	381544	NCBI Gene Model | MGI Sequence Detail	38648	C57BL/6J
transcript	NM_001145637	RefSeq | MGI Sequence Detail	1837	C57BL/6
polypeptide	NP_001139109	RefSeq | MGI Sequence Detail	441	C57BL/6

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR011989 Armadillo-like helical
  IPR016024 Armadillo-type fold
  IPR041090 Protein of unknown function DUF5578

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2686508

References

• Summaries
  All 23

  Phenotypes 9
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Armh1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42973	Chr4:117252232-117252255 (-)	-271 bp
Tssr42972	Chr4:117251879-117251891 (-)	88 bp
Tssr42971	Chr4:117251839-117251874 (-)	116 bp
Tssr42970	Chr4:117251810-117251831 (-)	152 bp
Tssr42969	Chr4:117251773-117251807 (-)	183 bp