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Ssh1 Gene Detail
Summary
  • Symbol
    Ssh1
  • Name
    slingshot protein phosphatase 1
  • Synonyms
    LOC384311, mSSH-1L
  • Feature Type
    protein coding gene
  • IDs
    MGI:2686240
    NCBI Gene: 231637
  • Gene Overview
    MyGene.info: SSH1
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:113937097-113993757 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 55.82 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    548 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2686240
protein coding gene Chr5:113937094-113993894 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029927
protein coding gene Chr5:116635073-116704261 (-)
A/J MGP_AJ_G0029892
protein coding gene Chr5:112061932-112120870 (-)
AKR/J MGP_AKRJ_G0029830
protein coding gene Chr5:115623098-115680676 (-)
BALB/cJ MGP_BALBcJ_G0029903
protein coding gene Chr5:113429820-113488096 (-)
C3H/HeJ MGP_C3HHeJ_G0029623
protein coding gene Chr5:116104343-116165996 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030357
protein coding gene Chr5:121149069-121213040 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027585
protein coding gene Chr5:106885559-106944355 (-)
CAST/EiJ MGP_CASTEiJ_G0029031
protein coding gene Chr5:115029074-115093232 (-)
CBA/J MGP_CBAJ_G0029590
protein coding gene Chr5:125719624-125786948 (-)
DBA/2J MGP_DBA2J_G0029740
protein coding gene Chr5:112123280-112180380 (-)
FVB/NJ MGP_FVBNJ_G0029697
protein coding gene Chr5:110913778-110972072 (-)
LP/J MGP_LPJ_G0029829
protein coding gene Chr5:117199030-117262135 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029728
protein coding gene Chr5:130228773-130287568 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030398
protein coding gene Chr5:115070096-115131051 (-)
PWK/PhJ MGP_PWKPhJ_G0028745
protein coding gene Chr5:110750821-110809918 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028583
protein coding gene Chr5:112616475-112675691 (-)
WSB/EiJ MGP_WSBEiJ_G0029107
protein coding gene Chr5:115636135-115699830 (-)



Homology
more
  • Human Ortholog
    SSH1, slingshot protein phosphatase 1
  • Vertebrate Orthologs
    11
  • Human Ortholog
    SSH1, slingshot protein phosphatase 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SSH1L
  • Links
    NCBI Gene ID: 54434
    neXtProt AC: NX_Q8WYL5
    UniProt: Q8WYL5

  • Chr Location
    12q24.11; chr12:108782690-108857606 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 41299
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;2 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SSH1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 231637 NCBI Gene Model | MGI Sequence Detail 56661 C57BL/6J ±  kb
transcript NM_198109 RefSeq | MGI Sequence Detail 8332 C57BL/6  
polypeptide Q76I79 UniProt | EBI | MGI Sequence Detail 1042 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 20
    cDNA 20

    Microarray probesets 6
Other
Accession IDs
less
MGI:2141229, MGI:2686241
References
more
  • Summaries
    All 43
    Developmental Gene Expression 1
    Gene Ontology 8
    Phenotypes 12
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:227247 Brommage R, et al., High-throughput screening of mouse gene knockouts identifies established and novel skeletal phenotypes. Bone Res. 2014;2:14034

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory